Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00102 ATGGCACTTTCCATTAAAAAAGAATTGTTTCCTCAACAATTTTCAACCAATATTAGGCTTCTTGTGATTGATCATGATATCAATCTTCTCAATGCTATTCAGAATGCATGCTATAAATTCCATTACTCAGTCAAGTCATGCTTGAAGGTTTCAGAtgctttgaattttttgaaggaaaaaaaggaTAGTTTTGATTTGGTACTAATTGAAGCTAAAATGCCTGATATGGATTCATATGGATTTTTGCAATATGTTACACAACAAATCAATATCCCTGTTATTATGATGTCTTGTGATGGCTCAAGAAGTGCTGTGGTGAAGGCTATTGAAGATGGAGCTTGTGATTATTGGATCAAACCTTTTACtgagaatctaatgatgaaCATGTGGCAACATGTTGCAAGAAAAATttggaatgaaaataaaaacctAGAATTGGAGGTTGAAGTCGATATGAAAAAAGGGATGATATATGATTCAAAATTGCCGTTAATTGAACCAAAAATAGGAGTGATCAACACTAGTGTGAAACAAGAGAGTGTTGAAAACAATGATGACGAACCTGAATCATCAACAAAGAAGACACGTGTTAAATGGTCATCAGAGTTGAATAAAAAGTTTATTCGTGCTGTGGTGGAACTCAACGTTGATAaggcaTCACCCAGAAAAATTCTTGCAAAGATGAATGAGCCTGCATTGACAAGAAAGCATGTTGCTAGTCACTTACAgAAATATAGGCTTCATTTGAAGAGACAAGagacaaagaaacaaaacagaacTGCACAAGTTACAGAATCCAAGTTTTCAAATGAATCTTCAGAATTTGATTTTGAAGCTAATGATGCTTCTACTTCTCATGTTGAATCTAAGCATATAGTTTATGCAACTCCAGTTAATGTTTATCAAACTGATGATTATGAGAAAGAAACTAGTCCTGGCTTTTGGACTGATTCTATTACTACTGCAcaagttcaaaatattttcttatcttGCCACCAAATTCCAATGACTCAAAAACCTCTTCCAATGATCATTGAAAATCCAATATCTTCGCGCGGTCTTTCGCCTTTTTGCACTGCTGATACTGTTGGTGATATTGGAGGAACCAACAATTCAAATGgacttcttcaaaaaatcaaatcaaatcaatctTTAGAATCCTTCTACTCGTGTCATTCATCATGGAGTGCTGAAGATACAAAAAATGTAGCATGA 1215 0.3086 MALSIKKELFPQQFSTNIRLLVIDHDINLLNAIQNACYKFHYSVKSCLKVSDALNFLKEKKDSFDLVLIEAKMPDMDSYGFLQYVTQQINIPVIMMSCDGSRSAVVKAIEDGACDYWIKPFTENLMMNMWQHVARKIWNENKNLELEVEVDMKKGMIYDSKLPLIEPKIGVINTSVKQESVENNDDEPESSTKKTRVKWSSELNKKFIRAVVELNVDKASPRKILAKMNEPALTRKHVASHLQKYRLHLKRQETKKQNRTAQVTESKFSNESSEFDFEANDASTSHVESKHIVYATPVNVYQTDDYEKETSPGFWTDSITTAQVQNIFLSCHQIPMTQKPLPMIIENPISSRGLSPFCTADTVGDIGGTNNSNGLLQKIKSNQSLESFYSCHSSWSAEDTKNVA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00102 404 CDD REC_typeB_ARR-like 21 134 - -
Tsu02g00102 404 Gene3D - 16 154 - -
Tsu02g00102 404 SUPERFAMILY CheY-like 17 146 IPR011006 -
Tsu02g00102 404 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 194 248 IPR006447 GO:0003677
Tsu02g00102 404 SUPERFAMILY Homeodomain-like 192 251 IPR009057 -
Tsu02g00102 404 Pfam Myb-like DNA-binding domain 196 246 IPR001005 -
Tsu02g00102 404 Gene3D - 190 252 - -
Tsu02g00102 404 Pfam Response regulator receiver domain 21 129 IPR001789 GO:0000160
Tsu02g00102 404 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 282 - -
Tsu02g00102 404 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 282 IPR045279 GO:0009736
Tsu02g00102 404 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Tsu02g00102 404 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00102 Tsu-Chr2 737845 739536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00102 13 261 Response Regulator Gene Family AT4G31920 34.100 5.52e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu02g00102 Response_reg 6.6e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00102 - - cam:101491966 260.381