Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00101 ATGGCACTTTCCATTAAAAAAGAGTTGTTTCTTCGACAATTTTCAACCAATATTAGGCTTCTTGTGATTGATCATGATATCAATCTTCTCAATACTATTGAGAAATTATGCTTTCAATTTCATTACTCAGtCAAGACATGCTCCAAGGTTTCAGATGCTTTGAATCTTTTACTGGAAAAAAAAGATAGTTTTGATTTGGTATTAATTGAAGCTAAAATGCCTGATATGGATTCATATGGATTTTTGCGACATGTTACGCAACAAATTAATATCCCTGTTATTATGATGTGTGCTGATAACACAAGAAGTGTTGTGATGAAGGCTATTGATGATGGAGCTTGTGATTATTGGGTCAAACCTTTTACTGAGACTCTAATCCAAAACATGTGGCAACATGTTGCAAGAAAACTttggaatgaaaataaaaacctAGAATTAAGCAAGGTTGAAGTCGGTATGAAAAAAAGGGACAACTTGGAGCAAGAGAGTGTTAAAAAGAATAATGACAAACCCGAATCATCAACAAAGAAGACACGTGTTAAATGGTCCTCAGAGTTGCATAGAAAGTTTGTTAGCGTTGTGAAAGAACTCAATGTTGATAAGGCAGTACCCAAAAAAATTCTTGTAAAGATGAATGAGCCTGGATTGACAAGAGAGCATGTAGCCAGTCACTTGCAgAAATATAGGGATCATTTGAAGAAAGGAGAgacaaagaaacaaagaaaacagAACAAAACTGCACAAGCTACAGAATCCTCAGAATTTGATTTTCAAGCTTATGATGCTTCTACTCCTCATGTTGTTCCCAACAATTTCATTCCTTTGGTTAATGCAGTTCCAGTTAATGTTTATCAAACCGATTCAGAGGACGACACTAGTTCATCAGCTTCTATCAACCAGCACAATAATTGGAGTGGATTTGAGACTAATTCTATTATTAATCCATCATTTCTAAATGCTGTTAATGCACGTTTTCCAAACGCGCAAGTTCGAAATGTTTTGTTAGCTTGGCATAACCCCTCACAAAATTCCAATGACTCAACCTCTTCCAATGatctttaa 1062 0.339 MALSIKKELFLRQFSTNIRLLVIDHDINLLNTIEKLCFQFHYSVKTCSKVSDALNLLLEKKDSFDLVLIEAKMPDMDSYGFLRHVTQQINIPVIMMCADNTRSVVMKAIDDGACDYWVKPFTETLIQNMWQHVARKLWNENKNLELSKVEVGMKKRDNLEQESVKKNNDKPESSTKKTRVKWSSELHRKFVSVVKELNVDKAVPKKILVKMNEPGLTREHVASHLQKYRDHLKKGETKKQRKQNKTAQATESSEFDFQAYDASTPHVVPNNFIPLVNAVPVNVYQTDSEDDTSSSASINQHNNWSGFETNSIINPSFLNAVNARFPNAQVRNVLLAWHNPSQNSNDSTSSNDL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00101 353 Gene3D - 173 234 - -
Tsu02g00101 353 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 319 IPR045279 GO:0009736
Tsu02g00101 353 CDD REC_typeB_ARR-like 21 134 - -
Tsu02g00101 353 SMART REC_2 18 130 IPR001789 GO:0000160
Tsu02g00101 353 Pfam Myb-like DNA-binding domain 179 229 IPR001005 -
Tsu02g00101 353 Pfam Response regulator receiver domain 21 128 IPR001789 GO:0000160
Tsu02g00101 353 MobiDBLite consensus disorder prediction 231 252 - -
Tsu02g00101 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 233 IPR017930 -
Tsu02g00101 353 SUPERFAMILY Homeodomain-like 175 234 IPR009057 -
Tsu02g00101 353 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 15 319 - -
Tsu02g00101 353 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 177 231 IPR006447 GO:0003677
Tsu02g00101 353 MobiDBLite consensus disorder prediction 157 180 - -
Tsu02g00101 353 Gene3D - 16 154 - -
Tsu02g00101 353 Coils Coil 225 245 - -
Tsu02g00101 353 SUPERFAMILY CheY-like 17 146 IPR011006 -
Tsu02g00101 353 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00101 Tsu-Chr2 735234 736768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00101 3 247 Response Regulator Gene Family AT4G31920 38.189 1.20e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu02g00101 Response_reg 4.5e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00101 - K14491 cam:101491966 252.292