Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00100 ATGGCACTTTCCATTGAGGAAGAGGTACTTTCTCAAGAACAATTTACAGACCATGTTAGGGTTCTTGCTATTGATCATGATATCAATATTCTCAATACTATTGAGAAAATGTGCTCTCAATTTGATTACCCAGTTAAGACATGCACCAAGATTTCTGAAGCCTTAAAtcttttgaaggaaaaaaaagattgtTTTGATGTGGTAGTGATTGAAGCTCAAATGCCCGACATGAATTCTTGTGATTTTTTGCAACATGTTACACAACACTTTAATATCCCTGTCATTATGATGTGTGTCGATGGCTCAAAACGTGTTGTGATGAAAGCTGTTTTAAATGGAGCTTGTGATTATTGGAtcaaaccattggttgaggatcaaATCAAGTATATATGGAAACATGTTGCAATGAAAGTTTTTAATGAAACTAAACAAATAGGAATTGATGAAAAATCGGGGGCTGAAGTAAAGAAAGAATTGGAGAAAGATGATTCAAAATTGCCATTAATTGGTGCAACAAGAGAAAGAGATATTGATAATAATGCCACAAAAGAGAATCTCGAAGAGGACAAAGATAAAACTGAATCTCCACCTAAGAAAGCACGTGTTATATGGTCACAAGAGTtgcataaaaaatttatcaatgCTCTGATGGAACTCAATATTGATAaggcaGTACCAAGAAAAATTCTTGAAAAGATGAATGTGCCTGAATTGACAAGAGAGCAAGTTGCTAGTCACCTAcagAAATTTAGACTTTATTTGAAgacagaggctgaaaaacagcaacaaaaacaaatgtCACAATTTTCTTCAGGATATTATCTTCAAGCATATGATCCTTCTACTTCTACTCATGCTGCTGTTCATCATCAATTGCCAAAAATGTACCAAAATCCAAATGCCATATTgacatcaccatcatcatcttcatcatcactgtggCCTAGCAATTCTCATGCTGCATTACAACAAACTTCAATGTCATATCTCAGCAATTCTTCTCACCAAGTTCCCAACAATTCAATGTGGCAGCAACTTCCACAACCATCTAATAATATACCTCATGCTAATGGTTTTGGAATGTTTGGGAATAATACAATGTTGCCTTTGCAGCAGGAACAATATCATGTTCCTCAAATTAATGATGCAAGTGTTCATCAAACTAGCTTGAAAGTTTCAGGAACTAATAGTCGATTTGGCATTAATTCATCATTTAATAGTAATCTTAATGCTAATTTTCGAAACACGCTAGGTGGAAGTTTTTTATCAGGGAGCAGTTCTAATCAGATTCCAATGACTCAACCTCTTCCGATGTCATCATTGCCGATTAATGCTTTGGGATCTTTGCGTGGTGTTTCGCCTTTTTCTGCTGCTAATATTGGTAATAGTACTAATGCCAATACACCAATGTCATCATTTCCAATTGATGCTTCGGGATCTTTGCGTGGTGTATCGCCTTTTTTTACTGCTGATATTGGTAATAGTATTAGTACTAATGCCAATACAACAAGGGCGGAGGAGCCAAATTCTATCTATGGTTCAACAATGGGTAATCAAATTTCAATGGCTCAACCTCTTCCAATGTCATCATTGCCGATTGATGCTTCGAGTTCTTTGCGTGGTGTTTCGGCTTTTGGTGCTGCTGATGTTGGTGGTACTAATGTGAACACAATAAGGGGATCAGAGGAGGCAGAGCTGAATGATATATTTGGTTCACTACAGGATTATCTTATGGATTga 1740 0.3333 MALSIEEEVLSQEQFTDHVRVLAIDHDINILNTIEKMCSQFDYPVKTCTKISEALNLLKEKKDCFDVVVIEAQMPDMNSCDFLQHVTQHFNIPVIMMCVDGSKRVVMKAVLNGACDYWIKPLVEDQIKYIWKHVAMKVFNETKQIGIDEKSGAEVKKELEKDDSKLPLIGATRERDIDNNATKENLEEDKDKTESPPKKARVIWSQELHKKFINALMELNIDKAVPRKILEKMNVPELTREQVASHLQKFRLYLKTEAEKQQQKQMSQFSSGYYLQAYDPSTSTHAAVHHQLPKMYQNPNAILTSPSSSSSSLWPSNSHAALQQTSMSYLSNSSHQVPNNSMWQQLPQPSNNIPHANGFGMFGNNTMLPLQQEQYHVPQINDASVHQTSLKVSGTNSRFGINSSFNSNLNANFRNTLGGSFLSGSSSNQIPMTQPLPMSSLPINALGSLRGVSPFSAANIGNSTNANTPMSSFPIDASGSLRGVSPFFTADIGNSISTNANTTRAEEPNSIYGSTMGNQISMAQPLPMSSLPIDASSSLRGVSAFGAADVGGTNVNTIRGSEEAELNDIFGSLQDYLMD 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00100 579 Pfam Response regulator receiver domain 21 128 IPR001789 GO:0000160
Tsu02g00100 579 SUPERFAMILY CheY-like 18 135 IPR011006 -
Tsu02g00100 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 403 IPR045279 GO:0009736
Tsu02g00100 579 CDD REC_typeB_ARR-like 21 135 - -
Tsu02g00100 579 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Tsu02g00100 579 MobiDBLite consensus disorder prediction 172 199 - -
Tsu02g00100 579 SMART REC_2 19 131 IPR001789 GO:0000160
Tsu02g00100 579 Gene3D - 18 146 - -
Tsu02g00100 579 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Tsu02g00100 579 Gene3D - 197 256 - -
Tsu02g00100 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 15 403 - -
Tsu02g00100 579 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00100 Tsu-Chr2 730979 733733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00100 3 276 Response Regulator Gene Family AT2G25180 36.331 1.66e-50 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g00100 Response_reg 7.4e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00100 - - mtr:MTR_8g105600 253.447