Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00093 ATGATGCTGGGAtcaacttcttcttctactGCAATTTCCATGTCTTGTTCTCCAACTACAAAGCATGATGTGTTCCTCAGCTTCAGAGGAGAGGACACACGTGACAACTTCATCAGTCATCTTTATGCTGAACTCTGTAGGAAAAACATTGAAACCTTCATTGATTACAGACTCGCCAGAGGCGATGAGATTTCTCCTGCACTCTACAAAGCAATTGAAGAATCAATGATTTATGTCGTCATTTTGTCCGAGAACTACGCTTCTTCCACTTGGTGTTTGGATGAACTCACTAAGATACTGGAATGCAAAGTGAAATATGGAAGGAATGTCATACCCGTCTTCTATAAGGTGGATCCATCAAATGTGAGGAATCAAAGAGAGAGTTATGCAGAAGCTTTTGTTAAGCATCAACGTCGGTTTAAGGACGGTCAACTGGATGCATGGAAGAAAGCTCTAACCCAAGTAGCTGGACTCTCTGGCTGGGATTCACAAGTAACCAGACCAGAACACAAACTCATTGAAGATATTGTGGaagatattttaagaaaattgaaaatgaaattttctttCGTAAGTGATTACGAAGGAATGATTGGAATTGACAAACATGCTAAACAAATTGAATCATTGTTGAAAGTTGAGTCTGCTGGTATTCGAATTGTTGGAGTTTGGGGTATGGGAGGAATAGGAAAAACAACAATTGCTACTGCAATATATCACAAATTGGCTACTCAATTCAGTTCCAGCAGCATCATCCTTAATGTTCAACAAGAAATAGAGAGATTTGGACTGCAAAATATACGAAACAAATATTTATCTGAGCTTCTAGAGGAAAATAACCCGACCTCTAGATTAAGTCTTTCAAATGATCGAAGGCTCAAATCGACAAAAGCTCTCCTTGTTCTTGATGATGTGAACAATTCGGCTCAGCTTAAAGATTTAATTGGAATGCGTAGTAACTTTGCGCCAGGTAGTAGAATCATTGTGACCAGTAGAGACAAGCAGGTATTGAATAATGTTGATGCTGATGGAATATATGAAGTCAAGGAGATGAATTTTCATGAATCTCTACGACTGTTTTGTTTAAATGCCTTTAAACAAAACTATCCCGTAGAAGATTATGCGGACTTATCAGAGAAGATATTAAATTATGCTAGAGGGGTTCCATTAGCTCTTGAAGTTTTGGGATTTTTGTTGTGCGGTAGAACaaaggaagcatgggaaagtCAGTTACAAAAGCTGGATAAGCTGCCCGAGAATGACATTTTCAAAGTGTTGAAATTAAGTTATGAAGGGCTTGACGAAGAACAGAAGGATATATTTCTTGACATAGCTTGTTTCTATAGAGGACATTTGGAGAATGTTGTAGCACAAACACTGGATAGCTGTGGTTTCTCTGCTCATATCGGAATGGAGGTTCTCAAAGATAGGGCGCTTATATCTATTTCGGAAGGTAGAATTGTGATGCATGATCTAATACAGGAAATGGGGCATGAAATTATTCGTCAACAATGTGTCACTGATCCTGGAAAACGAAGTCGACTGTGGAAACCTGAGGAAATATATCAAGTTTTGAAAAAGAACAAGGGGACAGAGGCAATCCAATGTATTTTCCTGGACATATGCAAGATAGAAAAGGTTGAACTTCATGCTAAAACTTTCAAAAAGATGGATAATCTTAGAACAATGTTGTTCTATAAGCCTTACGGACTTCCGAAAGGGTCAAATATTATCCTTCCTTCATTTCTTGAAAGTCTTCCGGATGATTTAAAGTTTCTTCGTTGGGATGGCTTCCCTCAAAAATCTTTGCCACAGGACTTTTTCCCCAAATATCTTGTTAAACTTGAGATGCCACACAATCATCTTGAACAACTTTGGCAGAGAGATAAGGATTTACCAAATTTGAAAACACTTGACCTTCGTGGTTCTCATAACTTGATTGAAATACCAGACCTTGCCCAATGTCCAAATATTGAAGAAGTAATTCTTAGTCATTGCACAAAGTTGGGTCAAGTTTACTCCTCTAATTTCCTGTGCAAGCTTAAATGTTTATGGTTAAATGGTTGTATTAGCCTTAGGAGTTTACATATTCCTAGCAATATTCTCCTGAGAACTTCTGGATTGATAGTACTCCATGGTTGTCACAATCTTGACATGTTTGTAGTAGGTAATGAAAAAATGGAGGTCCAATTCCATAGTCGTACAATTTGTATGTTCAGAAACATTTTTCCTAAGGTAACAAAAGAAAAGCGATTAAGTTCCCCTTTTAAGAAATTCTCAAATACTTTTGAACCCCTAGATTGTGTTGAGTTAAATAAAGAACCGAAAGATAATATTCAATTACTAAGCTTAGAAGTGTTGAGAGAAGGGTCACCCTCATTATTTCCAAGTCTGAACGAGCTTTGTTGGTTAGATCTCTCATATTGTGAATCCCTCTTGAGCATTCCAACTGAAATCTTCAagttaaaatttctaaaaagaCTTTACCTCCGTGGTTGCTTTAATTTGGAGAAGTTCGGTGAGATTAAGGAGACTATAGAAAGTTTAGTGGTGCTCATCTTAGATGAAACAGCAATCAAAGAACTACCTTCATCCTTGCACCATTTGGTCGGACTTGAAGAATTGAGCTTGTTCAATTGCCAGAAGCTTGAGACTATTCCATCATCCATTGGAAGTCTTGGCAAACTCAGCAAGTTAGACCTTACCTTCTGTGAATCACTTGAAACGTTTCCGAGCAGTATTTTCAAATTGAAGTTGACAAAACTTGATTTGCATGGTTGTTCAATGCTAAATACCTTTCCAGAGATCTTGAAACCTGCCGAAACTTTTGTTCACATTAACTTAACAAAAACAGCAATTAAGGAACTGCCTTCATCTTTGGAGTATTTGGTTGGGCTTCAGACCTTGTGCCTGAAGTTATGCACTGAGCTGGTGTCACTTCCAAACAGCATCATTAATCTAAACTATCTATCCGAGCTTGATTGTTCGGGCTGTTGCAGTTTAACAGAAATCCCAAATAACATTGGTAGTTTGCCATCATTGAGGAAACTCTCACTGCAAAATACTAGTATTGTGAACCTTCCTGAGGGTATAGCTCATCTCTCAAGCTTGAAAGGTGAAATCACTTGA 3129 0.3707 MMLGSTSSSTAISMSCSPTTKHDVFLSFRGEDTRDNFISHLYAELCRKNIETFIDYRLARGDEISPALYKAIEESMIYVVILSENYASSTWCLDELTKILECKVKYGRNVIPVFYKVDPSNVRNQRESYAEAFVKHQRRFKDGQLDAWKKALTQVAGLSGWDSQVTRPEHKLIEDIVEDILRKLKMKFSFVSDYEGMIGIDKHAKQIESLLKVESAGIRIVGVWGMGGIGKTTIATAIYHKLATQFSSSSIILNVQQEIERFGLQNIRNKYLSELLEENNPTSRLSLSNDRRLKSTKALLVLDDVNNSAQLKDLIGMRSNFAPGSRIIVTSRDKQVLNNVDADGIYEVKEMNFHESLRLFCLNAFKQNYPVEDYADLSEKILNYARGVPLALEVLGFLLCGRTKEAWESQLQKLDKLPENDIFKVLKLSYEGLDEEQKDIFLDIACFYRGHLENVVAQTLDSCGFSAHIGMEVLKDRALISISEGRIVMHDLIQEMGHEIIRQQCVTDPGKRSRLWKPEEIYQVLKKNKGTEAIQCIFLDICKIEKVELHAKTFKKMDNLRTMLFYKPYGLPKGSNIILPSFLESLPDDLKFLRWDGFPQKSLPQDFFPKYLVKLEMPHNHLEQLWQRDKDLPNLKTLDLRGSHNLIEIPDLAQCPNIEEVILSHCTKLGQVYSSNFLCKLKCLWLNGCISLRSLHIPSNILLRTSGLIVLHGCHNLDMFVVGNEKMEVQFHSRTICMFRNIFPKVTKEKRLSSPFKKFSNTFEPLDCVELNKEPKDNIQLLSLEVLREGSPSLFPSLNELCWLDLSYCESLLSIPTEIFKLKFLKRLYLRGCFNLEKFGEIKETIESLVVLILDETAIKELPSSLHHLVGLEELSLFNCQKLETIPSSIGSLGKLSKLDLTFCESLETFPSSIFKLKLTKLDLHGCSMLNTFPEILKPAETFVHINLTKTAIKELPSSLEYLVGLQTLCLKLCTELVSLPNSIINLNYLSELDCSGCCSLTEIPNNIGSLPSLRKLSLQNTSIVNLPEGIAHLSSLKGEIT 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00093 1042 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 736 IPR044974 GO:0006952
Tsu02g00093 1042 Gene3D Ribonuclease Inhibitor 525 730 IPR032675 -
Tsu02g00093 1042 Gene3D Ribonuclease Inhibitor 781 941 IPR032675 -
Tsu02g00093 1042 Gene3D Ribonuclease Inhibitor 942 1039 IPR032675 -
Tsu02g00093 1042 Pfam NB-ARC domain 206 429 IPR002182 GO:0043531
Tsu02g00093 1042 ProSiteProfiles TIR domain profile. 20 184 IPR000157 GO:0007165
Tsu02g00093 1042 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 736 - -
Tsu02g00093 1042 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 779 890 IPR044974 GO:0006952
Tsu02g00093 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 444 IPR027417 -
Tsu02g00093 1042 Gene3D - 351 434 IPR042197 -
Tsu02g00093 1042 SUPERFAMILY L domain-like 488 720 - -
Tsu02g00093 1042 PRINTS Disease resistance protein signature 385 399 - -
Tsu02g00093 1042 PRINTS Disease resistance protein signature 630 646 - -
Tsu02g00093 1042 PRINTS Disease resistance protein signature 220 235 - -
Tsu02g00093 1042 PRINTS Disease resistance protein signature 292 306 - -
Tsu02g00093 1042 Pfam Leucine Rich Repeat 611 629 IPR011713 -
Tsu02g00093 1042 Gene3D - 185 346 IPR027417 -
Tsu02g00093 1042 Gene3D - 16 184 IPR035897 -
Tsu02g00093 1042 SUPERFAMILY L domain-like 789 1037 - -
Tsu02g00093 1042 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 779 890 - -
Tsu02g00093 1042 Pfam TIR domain 21 190 IPR000157 GO:0007165
Tsu02g00093 1042 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 161 IPR035897 -
Tsu02g00093 1042 SMART till_3 21 158 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00093 Tsu-Chr2 649077 672359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00093 800 983 WRKY Transcription Factor Family AT4G12020 33.690 1.51e-16 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00093 - - ccaj:109803335 1228