Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00077 ATGCTAGGTTCATTACCTATACTTCCTTTACCTGCTCCTCCAGTTGATGGAAATCTCGGTCCTCTCCCCGAGGCTCAACTCACTCAGGAGGAGGTCAACGAGAGGAATGAGAATGAGAAATCCTCGATTGAGGAAGCTACCCCTACAACGGTTGCTACACACACTAAAACTATTGGAATAATTCATCCCCCTCCAGATATTAGAACCATTGTTGATAAAACCTCTGTGTTCGTTGCTAAAAATGGTCTTGAATTTGAAAAGAGGATTATTGCTAGTAATGCAGGAAATGCTAAGTTTAATTTCCTCAATTCATCGGATCCATATCATGCGTATTATCAGCACAGGTTGGCTGAGTTTCGTTCTCAGAATCAGTCTTCTACTCAACAACCTGGGGATTCTGCTCTACTGGAATCGGCTCCGCCTGTGCCGTCGGCTACTGATAGTAACGATGAAGCAACTACTGAGAAGCCTGATGTTTCTGCTCAGTTTAGACCAGTAAGGAAAGTGCTTGATCCTCCCGAGGCTGAGCAGTATACAGTTAGGCTCCCTGAAGGAATTACAGGGGAAGAGCTCGATATAATAAAGCTTACAGCACAGTTTGTGGCTCGAAATGGGAAATCCTTTTTGACTGGATTGACAAGTAGGGAAATTAATAATCCCCAGTTTCATTTCTTGAAACCAACACACAGCATGTTTACATTTTTTACTTCCCTTGCGGATGCATATTCAAAGGTTTTGATGCCTCCCAAGGGTTTGACTGAGAAGCTGAAGAAGAGTGTCCCTGACATGACTACTGTGCTTGAAAGGTGTGTGAATAGGCTGGAATGGGAGCGTTCTCAAGAGCAAGCTAGGCAAAAGGCTGAAGATGAGATAGAGCAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGTAGTGGTTGAATCAATAGATTTTGCtgatgatgaggatgaagaATTGCCTCCTCCAATGACGCTTGAGGAGGTTATAAGGAGAAGCAAGATGACACCCATGGAAGAAGATATCGTTGAGCCAGGAAAGGAAGTAGAAATGGAAATGGATGAGGAAGAGGCCCAGCTTGTTGAAGAGGGAATGAGAGCTGCTAGTTTAGAAGACAATGATGAAGGGAAGAAGAATGAAGTCAGGGTTACTGAAGACCCCGAACCACCGATGAGGATTGTGAAGAACTGGAAAAGACCAGAGGAGAGGCTTCCTGCTGATAGAGATTCAACCAAGTATGTGGTTTCTCCTATCACTGGTGAATTGATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAGAGGATGTTTGCCAAAATTCGAGAAACCACGCTGGCACAAGATGATGAAATCTCAAAAAACATTGTCGGACTTGCTCGGACCCGTCCCGATATTTTTGGTACTACAGAGGAAGAGGTTTCCAATGCTGTGAAGGCTGAAattgagaaaaatgatgaacaaCCTAAGCAGGTTATATGGGATGGTCACAGTGGTAGTATTGGCCGTACCGCAAACCAAGCAATGTCACAGAATATCGGGAGTGAGGATCAAAATGATGCTTTtaataatgaatctaaaaaccTCCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGCATGCCTTCAGTTCGTCCCCTTCCACCACCACCTGGACTAGCTTTGAATCTACCTCGTGGTCCTATGCATACCATGCAGTATTCTAATCCTAATAGCGGTGGCCTTCCAATGCCTCCACCAAGACCACCAGGCATGCACATGATGCAATCTCTCAGGCCAGTGCCCCCACCTCAAATGCAAATGTCCGCTGGACAGCATTCCATGATGGGTGGTCAACCACCCCAAATGCATCCATCAATTCCTATGAATAATCAAGGAATTCCCATACCTCCACCGCCTGGATCTCAATTCACTCCTGTTCCACGGCCTTATGTTCCTCTCTCTCATCCACCATCAGGGATGCCTATGATGCATCCACCACCACCGCCTCAAGGACTACCACCTCCGCCGCCACCCGAGGAAGCTCTTCCCCCGCTCCCAGAGGAACCAGAACCAAAGAGGCAGAAGCATGATGATTCTATTCTGATCCCCGAGGATAAATTTCTGGCTCAACATCCGGGACCTGCTCGCATCAGTGTAGCTGTTCCTAATGTCGATGAAGGAAATCTCAAGGGACAAATTCTCGAAATAACTGTTCAATCTCTATCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCCGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCTGGCTTTCTCAAGGACAATATGTCACTTGCACATTACAATATTAGTGGAGGAGAAACACTCTCCCTAACCTTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2427 0.4471 MLGSLPILPLPAPPVDGNLGPLPEAQLTQEEVNERNENEKSSIEEATPTTVATHTKTIGIIHPPPDIRTIVDKTSVFVAKNGLEFEKRIIASNAGNAKFNFLNSSDPYHAYYQHRLAEFRSQNQSSTQQPGDSALLESAPPVPSATDSNDEATTEKPDVSAQFRPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKMTPMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDEGKKNEVRVTEDPEPPMRIVKNWKRPEERLPADRDSTKYVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLARTRPDIFGTTEEEVSNAVKAEIEKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGSEDQNDAFNNESKNLPGPAAPPPRPGMPSVRPLPPPPGLALNLPRGPMHTMQYSNPNSGGLPMPPPRPPGMHMMQSLRPVPPPQMQMSAGQHSMMGGQPPQMHPSIPMNNQGIPIPPPPGSQFTPVPRPYVPLSHPPSGMPMMHPPPPPQGLPPPPPPEEALPPLPEEPEPKRQKHDDSILIPEDKFLAQHPGPARISVAVPNVDEGNLKGQILEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNISGGETLSLTLRERGGRKR 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00077 808 MobiDBLite consensus disorder prediction 658 720 - -
Tsu02g00077 808 SUPERFAMILY Surp module (SWAP domain) 170 243 IPR035967 GO:0003723|GO:0006396
Tsu02g00077 808 MobiDBLite consensus disorder prediction 692 711 - -
Tsu02g00077 808 Pfam Ubiquitin family 736 803 IPR000626 GO:0005515
Tsu02g00077 808 MobiDBLite consensus disorder prediction 29 48 - -
Tsu02g00077 808 MobiDBLite consensus disorder prediction 586 603 - -
Tsu02g00077 808 MobiDBLite consensus disorder prediction 513 539 - -
Tsu02g00077 808 SMART ubq_7 729 801 IPR000626 GO:0005515
Tsu02g00077 808 ProSiteProfiles SURP motif repeat profile. 193 235 IPR000061 GO:0003723|GO:0006396
Tsu02g00077 808 ProSiteProfiles Ubiquitin domain profile. 749 805 IPR000626 GO:0005515
Tsu02g00077 808 Pfam Pre-mRNA splicing factor PRP21 like protein 262 474 IPR022030 -
Tsu02g00077 808 ProSiteProfiles SURP motif repeat profile. 70 112 IPR000061 GO:0003723|GO:0006396
Tsu02g00077 808 Pfam Surp module 191 242 IPR000061 GO:0003723|GO:0006396
Tsu02g00077 808 Pfam Surp module 68 119 IPR000061 GO:0003723|GO:0006396
Tsu02g00077 808 MobiDBLite consensus disorder prediction 543 569 - -
Tsu02g00077 808 Gene3D - 697 807 - -
Tsu02g00077 808 SUPERFAMILY Ubiquitin-like 704 806 IPR029071 -
Tsu02g00077 808 Gene3D Surp module 54 127 IPR035967 GO:0003723|GO:0006396
Tsu02g00077 808 Coils Coil 355 375 - -
Tsu02g00077 808 CDD Ubl_SF3a120 721 801 IPR035563 -
Tsu02g00077 808 MobiDBLite consensus disorder prediction 373 404 - -
Tsu02g00077 808 MobiDBLite consensus disorder prediction 121 165 - -
Tsu02g00077 808 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 160 808 IPR045146 GO:0003723|GO:0045292
Tsu02g00077 808 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 116 IPR045146 GO:0003723|GO:0045292
Tsu02g00077 808 SMART surpneu2 68 121 IPR000061 GO:0003723|GO:0006396
Tsu02g00077 808 SMART surpneu2 191 244 IPR000061 GO:0003723|GO:0006396
Tsu02g00077 808 PANTHER SPLICING FACTOR 3A, PROTEIN 160 808 - -
Tsu02g00077 808 PANTHER SPLICING FACTOR 3A, PROTEIN 7 116 - -
Tsu02g00077 808 Gene3D Surp module 186 244 IPR035967 GO:0003723|GO:0006396
Tsu02g00077 808 SUPERFAMILY Surp module (SWAP domain) 45 120 IPR035967 GO:0003723|GO:0006396
Tsu02g00077 808 Coils Coil 277 297 - -
Tsu02g00077 808 MobiDBLite consensus disorder prediction 658 691 - -
Tsu02g00077 808 MobiDBLite consensus disorder prediction 497 625 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00077 736 805 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 2.50e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00077 K12825 - gmx:100790309 1199.88