Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00074 ATGCCTTTTGTGAcacaagaaacaacaaaaacagaacaatgGAGAAAACTACACAGAAACCCAATCGGTTACAAACCCATTTTAGAAACAGATCCTAACACCAAACAAATTCGACCCATTATCCAATCCACTCGTTGTAAGTCCACAATTTCATCTCTTCTTCTATCCACATTCTCTAATGAAACCACAACCTCACAACAACCCAACAACAAAAAGATCAACTTTTCATCTGCTGCAGCTACCATTAGAGGTTTAGGATGCACTGCTGGTGCTTCTCAGCAGGTGTCGGTGCCGGCGGTGATTCGTGCTTCTGCAGATTGGCCTCATCAAGGTAACAAAAccagaaaaaagaagaagaacaagagaaacaacaacaagaacagTTGTATTAATGATGGTACTTGTGTTGATTTTCAAGATGTTTGGTGTGGACCTGGAATTGGATTCTCAAAAGATGCTGCTTCATCTGTTGATTGTGTTGTGTCTAAGAAGAATGCCTCTTCAACTTCAAGGGCTAAAATTGATGTGGACAAGATTACTCATAGAGGGTCTTCATCTTCATTCCGAAGGCGCACTACTGTTCACCCAGAAGCCTTCTCTTTTCCGGATACCGATCCTGACATTTTCACAGCTTGCTCTTTTGGAACTGCAACATACCCTCGCCATATCAGAGATCTTTCTTCTGATGATTTTTCTGAGATAATGGCACTTCAAGGAAGAATGCTAATGGGAAGACGATTCAATTCACACGACCTTTACAGAGATTGGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTTATGTCAATACCGGACTTGAAGAAGATGAGATCGAACCTTACATAAGGAAGACTAAGCTTCAGTTTTGTGAAGATGCATCAAAGCATCAAGTAGACAAAAAATGCAGCATCTGTCAGGAGGAGTATGAAGCAGATGATGAGCTTGGGAGGCTTAACTGTGATCATCTGTATCACTTTCAATGCATACAACAATGGGTTGCACACAAAAATTTCTGTCCAGTGTGTAAGCAGCAGGTTGCAGCTAGACACTGA 1080 0.388 MPFVTQETTKTEQWRKLHRNPIGYKPILETDPNTKQIRPIIQSTRCKSTISSLLLSTFSNETTTSQQPNNKKINFSSAAATIRGLGCTAGASQQVSVPAVIRASADWPHQGNKTRKKKKNKRNNNKNSCINDGTCVDFQDVWCGPGIGFSKDAASSVDCVVSKKNASSTSRAKIDVDKITHRGSSSSFRRRTTVHPEAFSFPDTDPDIFTACSFGTATYPRHIRDLSSDDFSEIMALQGRMLMGRRFNSHDLYRDWRLDVDNMSYEQLLELGERIGYVNTGLEEDEIEPYIRKTKLQFCEDASKHQVDKKCSICQEEYEADDELGRLNCDHLYHFQCIQQWVAHKNFCPVCKQQVAARH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00074 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 359 IPR045191 GO:0061630
Tsu02g00074 359 ProSiteProfiles Zinc finger RING-type profile. 311 352 IPR001841 -
Tsu02g00074 359 Pfam Ring finger domain 310 352 IPR001841 -
Tsu02g00074 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 357 IPR013083 -
Tsu02g00074 359 SMART ring_2 311 351 IPR001841 -
Tsu02g00074 359 MobiDBLite consensus disorder prediction 106 126 - -
Tsu02g00074 359 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 11 359 - -
Tsu02g00074 359 SUPERFAMILY RING/U-box 310 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00074 Tsu-Chr2 460644 464071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00074 18 266 C3H Transcription Factor Family AT1G73760 39.273 4.28e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00074 - - cam:101510167 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00074 02 460644 464071 Tsu03g03105 03 42820407 42825681 ECH
Tsu02g00074 02 460644 464071 Tsu02g00074 02 460644 464071 ECH