Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00071 ATGGCTTTTTCCTCTGAGATTCCCTACCGATTTCCAGAAGGTTTAAGAGTCTTTATCCTTGATCATGATACCACTCAACTTAATACCATTGCGGATATGTGCTTTCAATGCAACTACGAAgTTACCACATGCACAATGGCTTCTTTTGCCGTGCATCTTTTGAGAGAAACAAAGGGTTATTTCGACGTGATACTAATTGAAGCTCAAATGCCCGACATGAATTCCTACGATTTTTTGCAACGTGTTACACAAGAAATCAAAATTCCAATCATTATGATGGGTGTTGATGATGACACAACAAATGCAAGGATGAAGGCTATTGAAAAAGGGGCTTGTGAATATTGGCGTAAACCTTTGAATAAGAATCATATCAACAACATGTGGCAACATGTTGCAACAATTCAAGAACAAGATCAAATTCTTAGAATCTTGGAGGTAAAAACAGGACAAAAAATAATGAAGAGAGATGAAAGTgtaacaaaagaaacaaatgcTTGTGTTCTTGAAAAATATAGTGATAATGATCATTATCAACCTCCAATAAAGACTAATCGTGTATCATGGTCGTCACCAAAACTTCATGAACAATTTCTAAGAGTTGTGAATCAAATTGGCATTGATAAGGCAAAGCCAAAAACAATTGTTGACTTGATGAATGTTCCAGGTTTGACAACAAAGCATGTTTCTAGCCATTTGCAGAAATTGAGACTTGGTTTGAAGAGTTCAAGTAAAAAGACAAAGTTAAAGAAGAATTTGTCAAAAAGTGGAAGGAAAAATTCAAAGCAACATCAATATCATGTTCCTAATCCTAATGAAAGCCTTGAAGTTGTTCAGTCAATGCCTGCAGAACATGACCAAAATGTTGTACTGAACTCAGAAGTCATACAATGTGATAACAACTTTCATGCACAAGAGCATCAAAAGTTGTTCGATGATTTTGAAGTTTCCAATATGTTTACCGACAAAACCAACATGATGCTAGATGATTTACCATCACTATATGATGAAGCATGGTGTTCATCTGAATATGGCACATTTGATTGGTGTTAG 1050 0.3467 MAFSSEIPYRFPEGLRVFILDHDTTQLNTIADMCFQCNYEVTTCTMASFAVHLLRETKGYFDVILIEAQMPDMNSYDFLQRVTQEIKIPIIMMGVDDDTTNARMKAIEKGACEYWRKPLNKNHINNMWQHVATIQEQDQILRILEVKTGQKIMKRDESVTKETNACVLEKYSDNDHYQPPIKTNRVSWSSPKLHEQFLRVVNQIGIDKAKPKTIVDLMNVPGLTTKHVSSHLQKLRLGLKSSSKKTKLKKNLSKSGRKNSKQHQYHVPNPNESLEVVQSMPAEHDQNVVLNSEVIQCDNNFHAQEHQKLFDDFEVSNMFTDKTNMMLDDLPSLYDEAWCSSEYGTFDWC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00071 349 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 184 237 IPR006447 GO:0003677
Tsu02g00071 349 MobiDBLite consensus disorder prediction 243 270 - -
Tsu02g00071 349 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 309 IPR045279 GO:0009736
Tsu02g00071 349 SUPERFAMILY Homeodomain-like 181 241 IPR009057 -
Tsu02g00071 349 Gene3D - 181 241 - -
Tsu02g00071 349 CDD REC_typeB_ARR-like 17 132 - -
Tsu02g00071 349 Pfam Response regulator receiver domain 17 126 IPR001789 GO:0000160
Tsu02g00071 349 Gene3D - 12 138 - -
Tsu02g00071 349 SUPERFAMILY CheY-like 13 136 IPR011006 -
Tsu02g00071 349 MobiDBLite consensus disorder prediction 243 261 - -
Tsu02g00071 349 ProSiteProfiles Response regulatory domain profile. 16 132 IPR001789 GO:0000160
Tsu02g00071 349 SMART REC_2 15 128 IPR001789 GO:0000160
Tsu02g00071 349 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 12 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00071 Tsu-Chr2 447792 449721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00071 6 243 Response Regulator Gene Family AT4G31920 36.402 3.99e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g00071 Response_reg 1.7e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00071 - K14491 mtr:MTR_6g045327 253.062