Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00064 ATGGCTTTGACTGTTTCAACTCTTAATCAGTTTTCTCAAATTTCTGAAATTAATTCTGATAAGGCAACGTGGAATTTTAAAGCGAAAATCATAAGACTTTGGCAAGTATCTGATTTTAATCGCAACACTTTACCATTTTCTATTGAAATGGTACTCATGAATAATGATGGTGGTAGAATTCATGCTACTATAAAGAAAACTCTGatttacaaattcaaaaatgaTCTTATTGAGGGGAAAGTTTATTGCTTTGAAAATCTTGGTGTTTCAACAAATGGTGGTGCGTACCGCACAACTCATCACCCttataaaatgaattttcaatATACTTCTGTTGTTCAAAGATGTTATGGGTGTGTTGACTGGTTTTGGCCAAGAGCGCGAGATCACAAACTAAAATGGAACGACGACCAAACTGAATGTGATTATCTTGGAGCAAAATggATAATTGTTAAAACACCGTTAAACATGTTAGTTATTTACTCACCTAATCTCAATCAAAGTTTGTTACTATGTGACCTTTACAATAGGCATAAAATCCAATGTACTCTGTTTGGACCTTATGTCGATGAACTGAATGCTTTCCTTGGTGCGGGAGATTGTAACAATGCTACTGTTATCATGCAATTGGCAAAGACTAAATCTTTCCAAGACAAGATACACATCCAAAACTGCTTAAACTGTTCTGTTCTGATCTTTAACTCGACATGTGCTGAAAGTGTTGCATTGAGGTCAAGCTTTGCTGAATCTGTGGAAACCCCTTCTCCCATGACATTAACTCAAATCAACCTTGAATCTAGAGTTGAACCAATTGATGACTTTTTGTATAATACCCCGAGGATTACACTTCAATCTCTTAGTGATGCTCGAACTgGTTCCTTACATGTTGTTGCTGCAactgtcaaaagaattttgaatCCTGACAGTTTTTGGTACACAGCATGTGTATGTGGTAAAGGTGTGATTCTGGATTCACGAATGTTTTATTGCGAGAAGTGCAACAAACATGTATCTAAAGTGGTACCTAGGTTTTGTATCAAGGTTCGAGTCATGGACCATACCGATTCTGCTACATTTGTCATCTTTGACAATAATGCAGCAACGCTATTTGATATGTCTTGTGCAGACATGATTCATGAGATGGAAATTGCTGGTGGTGTTGGAGCTATGCCTCCTCAACTTCATTCATTAATTGATAATACTTGGCTGTTCAAGGTTGAGGCGAAGGCAAATCAGAACCAAATGTTTGAGCAATCTTTTAGGACTAACTTTTTTCAAGATGAAGCAATTCTTGCTCCAACATTAGATGTTGTTGAACAAGTAAATGATTGTGTGCTGTCCATGGTTCCCGGTGAGTCTACAGAGTACTTGAGTTGTGATACACCATGCAAATCAGATGAAGATCATGAAGTTCAAGACCAGTGGTTTACCTCAGAATTTTTGAACGACATAAAATGTTCTGGCATACCGAATCACCGTTTAACACTCAAAGTTGGTGTTCCTGTTATGTTGATGCGCAATATTGATCAGGCAAGCGGACTCTGTAACGACACTAGACTACAAATTTTGGACTTGGGAAAGAATGTTATTAAAGCCTCAATAATCACAGGAAAAAATGCTGGGGAAAATGTTCATATTCCAAGGATGGATTTAGTTCCTTCAGATTATGGCCTTCCTTTCAAGTTTGAGAGGCGGCAATTTCCTATATGTTTGTGTTTTGCAATGACCATCAATAAAAGCCAAGGCCAATCACTCTCCAAGGTTCCGCCGGAGCTGGGGTGGGGCAAGCTAAACATGGATGGTGTGAGTATTATTAATGGTGGGTCTAGTTGTGGAGGACTACTCTGGGGAGTGGATGGTGAATGGACCAGCGGAAGCAATTTATTTCATGGCGGCTCAAGTGGCCGCCGCCAAGAAATTTCGCCGGTAACAGAGTACACCAGCCGATACGGAAAAATCAGCTTGGAGGCAGGGAGCTCTAGCAAGAGCAAGGAAATGTCGAGACTGATGCTGAATCCGGCGAAGAATCACAAACCGGAAACGTATGAGGATTTGAAACTCGATGGTTCTTCTTTGCTTTTAAGCTCATTGGAGATGCACCTTCCGCGCCACTTGCTTCGTGCTCCTCGTGACCAGAAATTTACTTACATGCGCGATATTTTGCATGATTATGTGCCTCCAGCATTGCGCTCTAGAGATCAAATGCAAAAAGAATATAGAGAGAAGATAATGTCAAGTTATCAGCCTCTGCATCAAGAGTTGTACACTATTGATCCTGTAGCACTCTTTGTACCGACATTTCTGAAAGCAATTAATGATAATACGGAAAAAAGCTTTAGAAGTATAATGTCTGAACCCGCTCCAGGCATTTTTACATTTGAAATGCTTCAACCACGTTTTTGTGAGTTACTGATATCTGAgGTCGAACATTTTGAGAAGTGGGTTGACAGAACAAAATTCACTGTAATGCGTCCCAATACAATGAATCAATATGGTGCTGTACTTGATGACTTTGGCCTTCAACCCATGCTTAACAAGCTTATGGAAGATTTTATTTCTCCATTGTCAAAAGTGTTCTATGCAGAACTTGGCGGATCAACCCTGGATTCTCACCATGGGTTTATTGTTGAATTCGGCTTGCATAAAGATGTTGAAATGGAATTCCATGTGGATGACTCAGAAGTTACCTTAAATGTTTGCCTGGGTAGGCAATTTTCTGGAGGGGAGTTGTACTTTCGGGGCATGCGATGCAATAAACATTTACATACAATAAGTCGTTCAGAGGAGATCTTTGATTATTCGCATGTCCCTGGTTGTGCTGTGCTTCATCATGGTCGTCATCGCCATGGTGCTAGAGCCACAATTGCCGGTCATCGGGTCAACCTACTTCTGTGGTGCAAAAGTTCTTTATTTAGAGAAATGCAAAAGTTTAaaagagatttctttagctGGTGTACTGAGTGcaatcaagagaagaaagatAAGCAAGATAAGCTGCTCTCGGAATATGAGACTACCGAAATGGGACCTTGGAGAGGAGAGAAGAAGTCTCGGATTGTAGTCCTTGAGTTGAGGTATTGTGGCTTCTCTGTGTATCGTTGGGGATGGATAACAAATGGCTTCATTGATTTTGCTTCCAAACTTGTTTGA 3150 0.3914 MALTVSTLNQFSQISEINSDKATWNFKAKIIRLWQVSDFNRNTLPFSIEMVLMNNDGGRIHATIKKTLIYKFKNDLIEGKVYCFENLGVSTNGGAYRTTHHPYKMNFQYTSVVQRCYGCVDWFWPRARDHKLKWNDDQTECDYLGAKWIIVKTPLNMLVIYSPNLNQSLLLCDLYNRHKIQCTLFGPYVDELNAFLGAGDCNNATVIMQLAKTKSFQDKIHIQNCLNCSVLIFNSTCAESVALRSSFAESVETPSPMTLTQINLESRVEPIDDFLYNTPRITLQSLSDARTGSLHVVAATVKRILNPDSFWYTACVCGKGVILDSRMFYCEKCNKHVSKVVPRFCIKVRVMDHTDSATFVIFDNNAATLFDMSCADMIHEMEIAGGVGAMPPQLHSLIDNTWLFKVEAKANQNQMFEQSFRTNFFQDEAILAPTLDVVEQVNDCVLSMVPGESTEYLSCDTPCKSDEDHEVQDQWFTSEFLNDIKCSGIPNHRLTLKVGVPVMLMRNIDQASGLCNDTRLQILDLGKNVIKASIITGKNAGENVHIPRMDLVPSDYGLPFKFERRQFPICLCFAMTINKSQGQSLSKVPPELGWGKLNMDGVSIINGGSSCGGLLWGVDGEWTSGSNLFHGGSSGRRQEISPVTEYTSRYGKISLEAGSSSKSKEMSRLMLNPAKNHKPETYEDLKLDGSSLLLSSLEMHLPRHLLRAPRDQKFTYMRDILHDYVPPALRSRDQMQKEYREKIMSSYQPLHQELYTIDPVALFVPTFLKAINDNTEKSFRSIMSEPAPGIFTFEMLQPRFCELLISEVEHFEKWVDRTKFTVMRPNTMNQYGAVLDDFGLQPMLNKLMEDFISPLSKVFYAELGGSTLDSHHGFIVEFGLHKDVEMEFHVDDSEVTLNVCLGRQFSGGELYFRGMRCNKHLHTISRSEEIFDYSHVPGCAVLHHGRHRHGARATIAGHRVNLLLWCKSSLFREMQKFKRDFFSWCTECNQEKKDKQDKLLSEYETTEMGPWRGEKKSRIVVLELRYCGFSVYRWGWITNGFIDFASKLV 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00064 1049 CDD RPA1_DBD_A_like 27 113 - -
Tsu02g00064 1049 Pfam Replication factor-A C terminal domain 297 412 IPR013955 -
Tsu02g00064 1049 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 653 1003 - -
Tsu02g00064 1049 SUPERFAMILY Nucleic acid-binding proteins 11 120 IPR012340 -
Tsu02g00064 1049 CDD RPA1_DBD_C 297 409 IPR013955 -
Tsu02g00064 1049 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 653 1003 - -
Tsu02g00064 1049 SUPERFAMILY Nucleic acid-binding proteins 285 412 IPR012340 -
Tsu02g00064 1049 Pfam Domain of unknown function DUF223 49 116 IPR003871 -
Tsu02g00064 1049 Gene3D - 9 116 IPR012340 -
Tsu02g00064 1049 Gene3D - 155 254 IPR012340 -
Tsu02g00064 1049 Gene3D - 275 429 IPR012340 -
Tsu02g00064 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 588 IPR027417 -
Tsu02g00064 1049 Pfam PIF1-like helicase 409 525 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tsu02g00064 1049 SMART p4hc 788 967 IPR006620 GO:0005506|GO:0016705|GO:0031418
Tsu02g00064 1049 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 850 968 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00064 Tsu-Chr2 399540 413108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00064 46 406 Core DNA Replication Machinery Family AT5G08020 21.522 8.56e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00064 - - mtr:MTR_8g106610 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00064 02 399540 413108 Tsu03g03075 03 42292016 42299593 ECH
Tsu02g00064 02 399540 413108 Tsu02g00064 02 399540 413108 ECH
Tsu02g00064 02 399540 413108 Tsu03g03075 03 42292016 42299593 PCT