Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g00056 | ATGGATCTCGAGGAGGACATTCGTTCTTTACAGCTTGACTCAGCAGAAGACATTAATGGGGTGGTAAATCCAGAGGATGAGAAGCCAGATGTTGATAATTCTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCTCAGTCTGTTGAGGCCGAGCCAAAAGCGAAAGATAAGGAAATTCCTTCCGttcaagatgaagaagatgagcaGATGAAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAATCTACAACTGGAGGTCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCCTATATTATGGACACAAATGAGGAGGAGAGAGTAAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGACACAACAAGGTTCACCATTTTGGATGCTCCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGGTATGATGACATTGAGGGAAAGATGATTCCATTTCTAAAGCAATCTGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTTAACATAAAAACAAGATTGGATAAAAGCCTTTGTTCATGGTGGGATGGACCTTGCTTATTTGAAGCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCAAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTATTAGGGATGGAGATTCCCTTTTGATCATGCCAAATAAGGATCATGTAAAAGTTGTTGCTATATATATCGATGAAAATCGGGTTAAACACGCTGGACCTGGTGAAAATTTACGGGTTCGATTGTCTGGCGTTGAAGAAGAAGACATATTGTCTGGGTTCGTCCTGTCTAGTGCTGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAGTTGCAGATCCTTGAATTACTGGACAATGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCATGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGCAACAAATTGATCCAAAGACAAGGAAGCCTATAAAAAAGAAAGTTCTCTTTGTAAAGAATGGTGCTATTGTATTATGCCGTGTTCAGGTTAATAACGTGATATGTGTTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGGAAAATCACAGCTCTCTGA | 1503 | 0.4012 | MDLEEDIRSLQLDSAEDINGVVNPEDEKPDVDNSDKMDEDPKQEVQAQSVEAEPKAKDKEIPSVQDEEDEQMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERYDDIEGKMIPFLKQSGYNVKKDVSFLPISGLMGFNIKTRLDKSLCSWWDGPCLFEALDSIEVPMGDPKSPFRMPIIDKFKDMGTVVMGKVESGTIRDGDSLLIMPNKDHVKVVAIYIDENRVKHAGPGENLRVRLSGVEEEDILSGFVLSSAANPISTVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLQQIDPKTRKPIKKKVLFVKNGAIVLCRVQVNNVICVEKFSDFPQLGRFTLRTEGKTVAVGKITAL | 500 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g00056 | 500 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - | |
Tsu02g00056 | 500 | Pfam | Elongation factor Tu domain 2 | 318 | 384 | IPR004161 | GO:0005525 | |
Tsu02g00056 | 500 | Gene3D | Translation factors | 303 | 388 | - | - | |
Tsu02g00056 | 500 | CDD | EF1_alpha | 78 | 298 | - | - | |
Tsu02g00056 | 500 | PRINTS | GTP-binding elongation factor signature | 217 | 226 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00056 | 500 | PRINTS | GTP-binding elongation factor signature | 157 | 167 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00056 | 500 | PRINTS | GTP-binding elongation factor signature | 78 | 91 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00056 | 500 | PRINTS | GTP-binding elongation factor signature | 173 | 184 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00056 | 500 | MobiDBLite | consensus disorder prediction | 21 | 72 | - | - | |
Tsu02g00056 | 500 | PANTHER | BNAA06G12300D PROTEIN | 2 | 494 | - | - | |
Tsu02g00056 | 500 | Pfam | Elongation factor Tu GTP binding domain | 74 | 276 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00056 | 500 | Gene3D | Translation factors | 392 | 500 | - | - | |
Tsu02g00056 | 500 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 130 | 145 | IPR031157 | - | |
Tsu02g00056 | 500 | CDD | eRF3_C_III | 392 | 500 | - | - | |
Tsu02g00056 | 500 | SUPERFAMILY | Translation proteins | 298 | 390 | IPR009000 | - | |
Tsu02g00056 | 500 | Pfam | Elongation factor Tu C-terminal domain | 390 | 499 | IPR004160 | - | |
Tsu02g00056 | 500 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 74 | 303 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00056 | 500 | PANTHER | TRANSLATION FACTOR | 2 | 494 | - | - | |
Tsu02g00056 | 500 | Gene3D | - | 55 | 298 | IPR027417 | - | |
Tsu02g00056 | 500 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 394 | 499 | IPR009001 | - | |
Tsu02g00056 | 500 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 64 | 309 | IPR027417 | - | |
Tsu02g00056 | 500 | CDD | eRF3_II | 305 | 386 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g00056 | Tsu-Chr2 | 349874 | 360460 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g00056 | 54 | 498 | Eukaryotic Initiation Factors Gene Family | AT5G10630 | 36.703 | 1.20e-94 | 299 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g00056 | K03267 | - | gmx:100793653 | 877.856 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu02g00056 | 02 | 349874 | 360460 | Tsu02g00056 | 02 | 349874 | 360460 | ECH |