Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00056 ATGGATCTCGAGGAGGACATTCGTTCTTTACAGCTTGACTCAGCAGAAGACATTAATGGGGTGGTAAATCCAGAGGATGAGAAGCCAGATGTTGATAATTCTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCTCAGTCTGTTGAGGCCGAGCCAAAAGCGAAAGATAAGGAAATTCCTTCCGttcaagatgaagaagatgagcaGATGAAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAATCTACAACTGGAGGTCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCCTATATTATGGACACAAATGAGGAGGAGAGAGTAAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGACACAACAAGGTTCACCATTTTGGATGCTCCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGGTATGATGACATTGAGGGAAAGATGATTCCATTTCTAAAGCAATCTGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTTAACATAAAAACAAGATTGGATAAAAGCCTTTGTTCATGGTGGGATGGACCTTGCTTATTTGAAGCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCAAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTATTAGGGATGGAGATTCCCTTTTGATCATGCCAAATAAGGATCATGTAAAAGTTGTTGCTATATATATCGATGAAAATCGGGTTAAACACGCTGGACCTGGTGAAAATTTACGGGTTCGATTGTCTGGCGTTGAAGAAGAAGACATATTGTCTGGGTTCGTCCTGTCTAGTGCTGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAGTTGCAGATCCTTGAATTACTGGACAATGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCATGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGCAACAAATTGATCCAAAGACAAGGAAGCCTATAAAAAAGAAAGTTCTCTTTGTAAAGAATGGTGCTATTGTATTATGCCGTGTTCAGGTTAATAACGTGATATGTGTTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGGAAAATCACAGCTCTCTGA 1503 0.4012 MDLEEDIRSLQLDSAEDINGVVNPEDEKPDVDNSDKMDEDPKQEVQAQSVEAEPKAKDKEIPSVQDEEDEQMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERYDDIEGKMIPFLKQSGYNVKKDVSFLPISGLMGFNIKTRLDKSLCSWWDGPCLFEALDSIEVPMGDPKSPFRMPIIDKFKDMGTVVMGKVESGTIRDGDSLLIMPNKDHVKVVAIYIDENRVKHAGPGENLRVRLSGVEEEDILSGFVLSSAANPISTVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLQQIDPKTRKPIKKKVLFVKNGAIVLCRVQVNNVICVEKFSDFPQLGRFTLRTEGKTVAVGKITAL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00056 500 MobiDBLite consensus disorder prediction 1 72 - -
Tsu02g00056 500 Pfam Elongation factor Tu domain 2 318 384 IPR004161 GO:0005525
Tsu02g00056 500 Gene3D Translation factors 303 388 - -
Tsu02g00056 500 CDD EF1_alpha 78 298 - -
Tsu02g00056 500 PRINTS GTP-binding elongation factor signature 217 226 IPR000795 GO:0003924|GO:0005525
Tsu02g00056 500 PRINTS GTP-binding elongation factor signature 157 167 IPR000795 GO:0003924|GO:0005525
Tsu02g00056 500 PRINTS GTP-binding elongation factor signature 78 91 IPR000795 GO:0003924|GO:0005525
Tsu02g00056 500 PRINTS GTP-binding elongation factor signature 173 184 IPR000795 GO:0003924|GO:0005525
Tsu02g00056 500 MobiDBLite consensus disorder prediction 21 72 - -
Tsu02g00056 500 PANTHER BNAA06G12300D PROTEIN 2 494 - -
Tsu02g00056 500 Pfam Elongation factor Tu GTP binding domain 74 276 IPR000795 GO:0003924|GO:0005525
Tsu02g00056 500 Gene3D Translation factors 392 500 - -
Tsu02g00056 500 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
Tsu02g00056 500 CDD eRF3_C_III 392 500 - -
Tsu02g00056 500 SUPERFAMILY Translation proteins 298 390 IPR009000 -
Tsu02g00056 500 Pfam Elongation factor Tu C-terminal domain 390 499 IPR004160 -
Tsu02g00056 500 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 74 303 IPR000795 GO:0003924|GO:0005525
Tsu02g00056 500 PANTHER TRANSLATION FACTOR 2 494 - -
Tsu02g00056 500 Gene3D - 55 298 IPR027417 -
Tsu02g00056 500 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 394 499 IPR009001 -
Tsu02g00056 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 309 IPR027417 -
Tsu02g00056 500 CDD eRF3_II 305 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00056 Tsu-Chr2 349874 360460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00056 54 498 Eukaryotic Initiation Factors Gene Family AT5G10630 36.703 1.20e-94 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00056 K03267 - gmx:100793653 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00056 02 349874 360460 Tsu02g00056 02 349874 360460 ECH