Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00041 ATGGACTActcaacttcttcttcctttgatcttcatcctcctcctcctcctccacccACCACCCTCCAACAACAACCCCAGTATGTAGCTGCTGCTGCCACTCATCCTCCTTATGCTGAGATGATATACAAAGCAATAGAGGCACTTAAAGAGAAAGACGGATCAAGCAAAAGAGCAATTGGAAAGTATATAGAACATGTCTACGGACAAGTTCTTCCACCACAACACTCAACTCTGTTAACACAACACCTCAACCACTTGAAATCTGCAGGTCTTCTCATCATGCTCAAAAAATCATACAAACTACCTTCCTCACTCCCACCACCTCCAACTCTTACCAGATCTGACCACTCTGAATCACATCTCCCTTTCACTCCCTTAACCCAAAGGGGTCGTGGTCGTCCCCCTAAGCCCAAaccccaacaacaacaacaaaatgtcTTCGTTTATCTCGacactactactactactactgctGTTGTACCAGCTCCTCCTCCTCCTACAACAACAACTGCTGTGGGCCCCGTGCTGCAGCAGCAGCAGCCTCCTGCTCCACTCAGAAGAGGCCGCGGACGTCCGCCTGGGACCTTCAGATCTAAGACCCTGAAGAGGCCCGGCCGTCCTCCTAAGCCCAAATCTGTCTCTAATGGCCTCAAACGACGTCCTGGCCGCCCGCCTAAAACTCAATCTCAACAACCAACTGTCATTCCTTTTGCTGCTGTTCCATTTCCTTCTGTTGTTCCAGACCAGCAGCCTACACTATCTGGTAGATCTACCAGGCCCAGAGGCAGGCCCAAGAAGTATGCAGATGAGGTGCTTCCAGGAGCACATGTGGTTGCTGCTCCAGCCACAAAGCAGGGCCGTCCTCCCAAGCTTGCTGCCGTAGGTAGGCCCAAGAATTCCTCCGGAAGGCCCGTTGGACGCCCAAAGGGATCAAAAGCTGCAAAAAAGCTTGCTGATGAAGATCTAAGAAAGAAACTTGAACACTTTCAATCAAAGATCAAGGAGTCTCTTGATGTGCTTAAGCCTTATTTTGATCAAGAAAGTCCAGCCACTGCAGTTGCAGCAATCAAAGAGTTGGAAATGCTGGCAACTTTGGACCTTAAAGCGCCATTAAAAGATGAAACACAGCAAGTACAGCCATTTACGGAACAGCCACAGCCGGAACAGCCACAGGTGGAACAGCCACAGGCGGAACAGCCACAGCCCGAACAACAGCTACCACCTCAGCAACTGCATCCCCAGTTAGTGCCGCAGGCGCAAATTTATGAACAGCAATATCTCCAGATGCCATTTCAGCCACAGGTGCAGCAACTTTTTCAACCACATACTTTAGCGCCGAGCTAG 1347 0.4655 MDYSTSSSFDLHPPPPPPPTTLQQQPQYVAAAATHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYGQVLPPQHSTLLTQHLNHLKSAGLLIMLKKSYKLPSSLPPPPTLTRSDHSESHLPFTPLTQRGRGRPPKPKPQQQQQNVFVYLDTTTTTTAVVPAPPPPTTTTAVGPVLQQQQPPAPLRRGRGRPPGTFRSKTLKRPGRPPKPKSVSNGLKRRPGRPPKTQSQQPTVIPFAAVPFPSVVPDQQPTLSGRSTRPRGRPKKYADEVLPGAHVVAAPATKQGRPPKLAAVGRPKNSSGRPVGRPKGSKAAKKLADEDLRKKLEHFQSKIKESLDVLKPYFDQESPATAVAAIKELEMLATLDLKAPLKDETQQVQPFTEQPQPEQPQVEQPQAEQPQPEQQLPPQQLHPQLVPQAQIYEQQYLQMPFQPQVQQLFQPHTLAPS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00041 448 MobiDBLite consensus disorder prediction 376 418 - -
Tsu02g00041 448 PANTHER HISTONE H1-LIKE 13 378 - -
Tsu02g00041 448 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g00041 448 Gene3D - 29 106 IPR036388 -
Tsu02g00041 448 PANTHER HISTONE H1 13 378 - -
Tsu02g00041 448 MobiDBLite consensus disorder prediction 111 125 - -
Tsu02g00041 448 SUPERFAMILY "Winged helix" DNA-binding domain 32 109 IPR036390 -
Tsu02g00041 448 MobiDBLite consensus disorder prediction 157 320 - -
Tsu02g00041 448 Pfam linker histone H1 and H5 family 35 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu02g00041 448 SMART AT_hook_2 187 199 IPR017956 GO:0003677
Tsu02g00041 448 SMART AT_hook_2 303 315 IPR017956 GO:0003677
Tsu02g00041 448 SMART AT_hook_2 219 231 IPR017956 GO:0003677
Tsu02g00041 448 SMART AT_hook_2 259 271 IPR017956 GO:0003677
Tsu02g00041 448 SMART AT_hook_2 129 141 IPR017956 GO:0003677
Tsu02g00041 448 MobiDBLite consensus disorder prediction 374 418 - -
Tsu02g00041 448 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 34 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu02g00041 448 PRINTS AT-hook-like domain signature 129 139 IPR017956 GO:0003677
Tsu02g00041 448 PRINTS AT-hook-like domain signature 185 196 IPR017956 GO:0003677
Tsu02g00041 448 PRINTS AT-hook-like domain signature 257 267 IPR017956 GO:0003677
Tsu02g00041 448 SMART h15plus2 32 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu02g00041 448 CDD H15 32 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu02g00041 448 MobiDBLite consensus disorder prediction 104 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00041 Tsu-Chr2 256799 259617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00041 41 107 Single Myb Histone (SMH) Gene Family AT1G49950 41.791 8.72e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00041 - - mtr:MTR_8g106980 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00041 02 256799 259617 Tsu02g00041 02 256799 259617 ECH