Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00030 ATGGAATTTGGTGATGGAAACGGAGAGCATGTTAACGTTGTTGATGGGATTGAAGAGCAAGCTTTCAATGAAACTGCCGACAATGATTCATGTACGGTTGATTTAGAGGTTAGTGGTAAAGAACCATACACTGGAATGAAATTTGGTTCACGAGAAAATGCTCATTCATTCTACAATGATTATGCTAAAGTTGTCGGGTTTGGAATATCAACTAAACATAGTCGCCGTTCAAAAGTTTCAAGACAGTTTATCGATGTGACTTATGCTTGCACAAGATATGGGAAGAAGCAGGAATCCATTGCACAAAATCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTAGCTTACGtataaaaagaaattgtgaTGGAAACTGGATTGTTCACAATTTCATTAAAGACCATAATCATGAACTTTTTCCTGAATATGCACATTATTTTCCTTGTCATAGAGGAATCAATAAAGCTCAAAAGCATTGTATTGAAAATTTGCAACATGCTGGAGTGAGAACCAACCAAATTTACGATGCAATGGCCAAACAACATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATATCAGAAATCATTTAGATAAAGGTCGGCGCTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTAGAGTGTTTTATGCACATGCAAGAAGAAAACCcaagatttttttatgcaattgaTTTGGATGATGAAGATCgtgtaaaaaatgtattttgggTGGATGCAAAAGGTAGAGATGACTATCAAGAGTTTGGAGATGTGATTTCATTTGATACTACATATATCACAAATAAGTATAAAATGCCATTTGCTCCTTTTATTGGTGTAAACAATCACTTTCAATCGAGGTTACTTGGCTGTGCATTACTCTCAGATGAGCGCACACATACTTTCATGTGGTTGATGAAAACATCGCTTAGAGCAATGGGTGGAAAACCTCCGAATGCAATTATAACTGATCAAGATAGAGCAATGAAAGCGGCTATTAAAGAGGTATTTCCTAATACTCGACATCGCTTTTGTCTTTGGCATATACTTCGTAAGGTGcctgttaaagtacaaaaAGAAGAGGCGGAAATGCAAGCTGATTTTAATACATGGCACAAACAACCTGTTCTCAAGACTCCATCACCTTTTGAGAAGCAAATGTCAATGATTTATACACATGAAGTCTTCAAGAAATTTCAAGTTGAAGTTTTGGGATTATCTGGATGTCGTATTGTGAAAGAGCATAAAGATAATCAAGTTACCACTTTTAAAATCTTTGACTTTCAAAAGAATGAAGAGTTTGTTGTAGAATTGATAAGGATGGCATTGGGGGGATTTTTTAATATCAGAAAAGCACGTATCACAAAATTAGATAAAGATTCCAAAAACAAGGTCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAACAAGAAATTATGGAGTTTGTGCATTTCCTCAAGAATCCTAAGAAATACCAAGACCTTGGTGCCAAAATTCCAAAAGGTGCGCTGCTCGTGGGTCCGCCTGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAAGCTGGTGTGCCATTTCTCTCTATGTCTGGTTCTGATTTCTTGGAACTGTTTGTCGGTGTTGGCTCTTCTAGGGTGAGAAACTTGTTTTATGAAGCAAGGAAGTGTGCTCCCAGTATAGTATTTATTGATGAGATCGATGCAATTGGTCAGGCAAGGGGTCGTGGAGGTTCCTCTTCTGGACATAATGAGCGTGAGAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGCTTTGGAACCACTGCTGGAGTTGTTGTGCTGGCAGGTACAAATACACCCGATGTATTAGACAAAGCCCTACTCAGGCCTGGGCGTTTTGACCGCCACATAACAGTTGATAAACCCGACATCAAAGGCCGTGACCAGATATTTCAGATTTACTTGAAAACAATCAAACTTGACCGCGTGCCTTCATATTATTCACCAAGACTTGCAGCCCTTACTCCAGGATTTTCTGGAGCAGACATTGCTAATGTTTGCAATGAAGCCGCTCTGTTTGCCGCAAGGACTGAAGAAGCACAAGTCACAATGGATCATTTTGATGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAGGGTAATAAGCAAGCTGCAAAGGCGCACTGTTGCTTACCATGAAGCAGGCCATGCTGTTGCAGGCTGGTTCTTGGAACATACTGAGCCATTGTTGAAAGTAACTATCGTTCCTCGTGGAACATCAACACTTGGGTTTGCCCAGTATGTTCCAAATGACAACCTTCTCATGACAAAAGAACAGCTTTTTGATATGACTTGTATGACCCTTGGTGGTCGGGCTGCCGAGAAGATTCTCATTGGGACAATCTCTACAGGAGCACAAGACGACTTGGAGAAAGTCACCAAAATGACATATGATCAAGTAGCTGTCTATGGTTTCAGCGAAAAAGTGGGTCTCCTCTCTTTCCCCCAAAGGGAGGACTCGTTTGAGACGTCCAAACCATACAGCAGCACAACTGGCGCATTAATTGATAATGAAGTGCGAGAATGGGTGAACAAGGCATATGAACGTACGATGCAACTTATAGAGGAACACAAAGAGAAAGTAGCTCAAGTTGCAGAGTTGCTGCTCGAAAAAGAAGTACTTCACCAAGATGACTTGCTCCGAGTGTTGGGCGTGCGACCCTTCAAGAGTGTTGAACTCTCTAATTATGATCGATTTAAGCTAGGGTTTCAAGATGAGGGGAAGTTGTAG 2802 0.3976 MEFGDGNGEHVNVVDGIEEQAFNETADNDSCTVDLEVSGKEPYTGMKFGSRENAHSFYNDYAKVVGFGISTKHSRRSKVSRQFIDVTYACTRYGKKQESIAQNPRPCLKVECEASLRIKRNCDGNWIVHNFIKDHNHELFPEYAHYFPCHRGINKAQKHCIENLQHAGVRTNQIYDAMAKQHGGYENIGCLEKDIRNHLDKGRRLALESGDANAMLECFMHMQEENPRFFYAIDLDDEDRVKNVFWVDAKGRDDYQEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLSDERTHTFMWLMKTSLRAMGGKPPNAIITDQDRAMKAAIKEVFPNTRHRFCLWHILRKVPVKVQKEEAEMQADFNTWHKQPVLKTPSPFEKQMSMIYTHEVFKKFQVEVLGLSGCRIVKEHKDNQVTTFKIFDFQKNEEFVVELIRMALGGFFNIRKARITKLDKDSKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYQDLGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSMSGSDFLELFVGVGSSRVRNLFYEARKCAPSIVFIDEIDAIGQARGRGGSSSGHNERESTLNQLLVEMDGFGTTAGVVVLAGTNTPDVLDKALLRPGRFDRHITVDKPDIKGRDQIFQIYLKTIKLDRVPSYYSPRLAALTPGFSGADIANVCNEAALFAARTEEAQVTMDHFDAAIDRIIGGLEKKNRVISKLQRRTVAYHEAGHAVAGWFLEHTEPLLKVTIVPRGTSTLGFAQYVPNDNLLMTKEQLFDMTCMTLGGRAAEKILIGTISTGAQDDLEKVTKMTYDQVAVYGFSEKVGLLSFPQREDSFETSKPYSSTTGALIDNEVREWVNKAYERTMQLIEEHKEKVAQVAELLLEKEVLHQDDLLRVLGVRPFKSVELSNYDRFKLGFQDEGKL 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00030 933 Gene3D Peptidase M41 723 914 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu02g00030 933 Gene3D - 450 640 IPR027417 -
Tsu02g00030 933 SMART AAA_5 503 643 IPR003593 -
Tsu02g00030 933 Pfam ATPase family associated with various cellular activities (AAA) 508 640 IPR003959 GO:0005524|GO:0016887
Tsu02g00030 933 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 447 907 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu02g00030 933 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 448 931 - -
Tsu02g00030 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 714 IPR027417 -
Tsu02g00030 933 Pfam MULE transposase domain 261 354 IPR018289 -
Tsu02g00030 933 SUPERFAMILY FtsH protease domain-like 724 912 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu02g00030 933 CDD AAA 504 641 - -
Tsu02g00030 933 Pfam Peptidase family M41 723 905 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu02g00030 933 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 81 922 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu02g00030 933 Gene3D - 642 719 - -
Tsu02g00030 933 Coils Coil 871 891 - -
Tsu02g00030 933 Pfam AAA+ lid domain 670 709 IPR041569 -
Tsu02g00030 933 ProSitePatterns AAA-protein family signature. 611 629 IPR003960 GO:0005524|GO:0016887
Tsu02g00030 933 PANTHER ATP-DEPENDENT PROTEASE 448 931 - -
Tsu02g00030 933 Pfam FAR1 DNA-binding domain 56 141 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00030 Tsu-Chr2 184237 193476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00030 450 932 Miscellaneous Gene Families AT2G29080 82.609 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g00030 Peptidase_M41 1.2e-63 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00030 K08956 - csin:114292355 830.476