Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00028 ATGTGGATGGTTGGTTACAATGAAGGTAGTGACTTCAACATGGCTGATTATCCATTCAATGGAAGGAAACTCAGGCCCCTCATCCCAAGACCAGTCACTTCTcctaacaacaacaacacttcAACTACAACTCCTTCCTTAAACCGCATTCATGGCGGCGCCAATGATTTCTTTTCACAATATCACAATCTCCAGGTGGGAGATCAGAGCAAGAGATCATCAGAGTTGAATAATAATAGTCCAGCAACAGGAGGAGGAGGAGTTGTAGTGAGTTCAAGATGGAATCCAACACCAGAACAGTTAAGAGCACTTGAAGAGTTGTATAGAAGAGGAACAAGAACACCATCTGCTGAACAAATCCAACAAATCACTGCACAGCTTAGAAGGTTTGGAAAAATTGAAGGCAAGAATGTTTTCTATTGGTTTCAGAATCATAAAGCCAGAGAAAGGCAGAAACGACGCCGTCAAATGGAATCAGCTGCTGATCAGTTTGATGCTACTCTTGAAAAGAAAGACTTattagGCGCAAGTAGGACAGTGTTTGAAGTTGAACACACCAAAAACTGGCTACCCTCTTCAAATTCCAGTACAAGTACTCTTCCTCTTGCAGAGGAATCTGTTTCAATTCAAAGGGCAGCAGCAAAAGCAGATCAGTACTCTAGAACAGATGGATGGGTCCAATTCGATGAGGCAACAGAATTACAACAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGTTAACTACTTGTCCTACCCTCATTAACACTACACAGCAAAATCCTAATTACACCACCCCccctactactactactactacttcatcatcaacaacaacaacagctaGCATGGCCACCCCTACCACAGTAACAACTAGGCTTATGGACCCAAAACTCACCCATCATCATGATCTCAGCTTATTCATTTCAACTCAAAGAGAAAATGCTTTTAATATCCACTTAAGCAGtatcaataacaacaacaacagtacTCATCACCAGGATGATCATTGTTTGGAATCTGATCAAACTCTTCAACTTTTCCCAATAAGGAATGGAGGAGGAGGAGATCATGGAGTATGCAGTGATGATGTTCATCATAATAACATTATTAACCAACAACACAAAGAGACAGAAATATCAGCTTCAGCAATAATGAATGCACCCAACCAGTTTATTGAATTTCTTCCCTTGAAGAACTGA 1215 0.3786 MWMVGYNEGSDFNMADYPFNGRKLRPLIPRPVTSPNNNNTSTTTPSLNRIHGGANDFFSQYHNLQVGDQSKRSSELNNNSPATGGGGVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAADQFDATLEKKDLLGASRTVFEVEHTKNWLPSSNSSTSTLPLAEESVSIQRAAAKADQYSRTDGWVQFDEATELQQRRNFMERNATWHMMQLTTCPTLINTTQQNPNYTTPPTTTTTTSSSTTTTASMATPTTVTTRLMDPKLTHHHDLSLFISTQRENAFNIHLSSINNNNNSTHHQDDHCLESDQTLQLFPIRNGGGGDHGVCSDDVHHNNIINQQHKETEISASAIMNAPNQFIEFLPLKN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00028 404 MobiDBLite consensus disorder prediction 261 287 - -
Tsu02g00028 404 ProSiteProfiles 'Homeobox' domain profile. 97 152 IPR001356 GO:0003677
Tsu02g00028 404 MobiDBLite consensus disorder prediction 67 93 - -
Tsu02g00028 404 Gene3D - 90 152 - -
Tsu02g00028 404 SMART HOX_1 89 156 IPR001356 GO:0003677
Tsu02g00028 404 Pfam Homeodomain 92 151 IPR001356 GO:0003677
Tsu02g00028 404 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 36 404 IPR044555 GO:0003700|GO:0099402
Tsu02g00028 404 MobiDBLite consensus disorder prediction 31 50 - -
Tsu02g00028 404 MobiDBLite consensus disorder prediction 26 54 - -
Tsu02g00028 404 MobiDBLite consensus disorder prediction 67 86 - -
Tsu02g00028 404 CDD homeodomain 93 153 IPR001356 GO:0003677
Tsu02g00028 404 SUPERFAMILY Homeodomain-like 92 158 IPR009057 -
Tsu02g00028 404 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 36 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00028 Tsu-Chr2 174213 176676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00028 1 404 Wox Gene Family AT3G18010 37.678 1.06e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu02g00028 Homeodomain 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00028 - - gmx:100777274 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00028 02 174213 176676 Tsu02g00028 02 174213 176676 ECH