Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00023 ATGGCGCATCTAAGCGAACCGGCGAAGCTAAGGTGGGGAGAATTGGAGGAAGACGACGGTGAAGATCTCGATTTCCTTTTACCGCCACGTCAGGTGATTGGTCctgatgaaaatggaatcaAAAGGGTTATTGAATACAAGTTCGATGATGACGGTAACAAGGTTAAGATCACAACAACCACTCGCACCCGCAAACTCGCCAATGCTCGTCTCAGCAAACGCGCCATCGAACGCCGTTCTTGGCCTAAATTCGGCGACGCCGTTCAAGAAGATGTCGGTGCTCGCCTCACTATGGTTTCCACTGAAGAAATCGTTCTGGAACGCCCCAAAGCTATtgGTGCCAACAAGGAGGATTCAAACATTATCGACCCACTGGCTCAACAAAAAGGTGCCGTTCTTATGGTATGCAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCGTATAAGGATCTTGCACAGCCTGCTGAGGGTTTTGTTGATAAACCTCCAGCAGCAGATGGTGCTGCTGCGGCTGCTGCCGGGGGTAAGGGTGCGTATGTACCTCCTAGCCTAAGAGCTGGTGCGGAGAGGACTACTGGGTCTGACATGAGGCGGAGGAATGATGAGAATTCTGTTCGGGTAACCAACCTCTCAGAAGACACAAGGGAACCTGATTTGCTTGAGCTGTTCCGGCCTTTTGGTGCTGTGAGCAGGGTCTATGTTGCTATTGATCAAAAGACTGGCATGAGCAGGGGATTCGGCTTTGTCAACTTTGTAAGCAGGGAAGATGCTCAGAGGGCTATTAACAAACTCAATGGATATGGCTATGACAATCTCATCCTGAGAGTTGAATGGGCCACCCCAAGAACAACATAA 867 0.4913 MAHLSEPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKRVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPKAIGANKEDSNIIDPLAQQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPAEGFVDKPPAADGAAAAAAGGKGAYVPPSLRAGAERTTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00023 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 155 IPR024675 -
Tsu02g00023 288 SUPERFAMILY RNA-binding domain, RBD 196 287 IPR035979 GO:0003676
Tsu02g00023 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Tsu02g00023 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Tsu02g00023 288 CDD eIF3G 38 154 IPR024675 -
Tsu02g00023 288 Gene3D - 179 288 IPR012677 -
Tsu02g00023 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Tsu02g00023 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Tsu02g00023 288 MobiDBLite consensus disorder prediction 185 207 - -
Tsu02g00023 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Tsu02g00023 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Tsu02g00023 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Tsu02g00023 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00023 Tsu-Chr2 150023 151697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00023 8 288 Eukaryotic Initiation Factors Gene Family AT3G11400 68.790 5.01e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00023 K03248 - gmx:100818725 496.123