Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00016 ATGTCTTCCACTGTTTTAgAGCACTTATTGGATGTGGATGAACAGGAGGAGCAGCAGCAACACAAATTCAAGattaaaaatttgagaaaagaATCCGATGATGGGAAAATTCACATACTGAAAGGCATCACCGTTGACATCCCAAAGGGTGTGATTGTTGGGATCATAGGCCCTAGTGGTAGTGGCAAGTCAACTCTCTTGAGGGCTTTGAATCGCCTCTGGGAACCACCTTCCTCCTCTGTCTTCCTCGATGGCCAAGATATCTGCCACCTTGACGTCCTTTCCCTCCGCCGCAAGGTTGCCATGCTCTTTCAGCTCCCTGCTCTCTTTGAAGGGACAGTTGCAGAGAATGTGAGGTATGGTCCACAACTTAGAGGAATAAAGCTAACAGATGATGAGGTGCGGAAGTTACTCATAATGGCAGACCTTGATGCTTCTTTCATGGATAAGTCTGGTGCTGACCTCTCTGTGGGTCAGGCTCAAAGAGTTGCACTTGCTAGAACTCTAGCTAATTCACCTGAGGTTTTGCTGCTGGATGAGCCTACTAGTGCATTAGATCCAATATCCACAGAAAACATAGAAGGTGCCTTGATGAAGTTGAACAAGAATCAGGGCATGACATTGATCATGGTTTCTCATAGCATCAAACAAATCCAGAGGATGGCTGACGTTGTGTGTTTGCTTGTTGATGGTGAAATTGTTGAAGTTCTTAAGCCTAATCAACTCTCTCAAGCTAAGCATCCCATGGCAAGGAGGTTTCTTGAACTCAGTTCTTAA 777 0.4453 MSSTVLEHLLDVDEQEEQQQHKFKIKNLRKESDDGKIHILKGITVDIPKGVIVGIIGPSGSGKSTLLRALNRLWEPPSSSVFLDGQDICHLDVLSLRRKVAMLFQLPALFEGTVAENVRYGPQLRGIKLTDDEVRKLLIMADLDASFMDKSGADLSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEGALMKLNKNQGMTLIMVSHSIKQIQRMADVVCLLVDGEIVEVLKPNQLSQAKHPMARRFLELSS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00016 258 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 7 258 IPR005670 GO:0005315|GO:0016020|GO:0035435
Tsu02g00016 258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 23 255 IPR003439 GO:0005524
Tsu02g00016 258 CDD ABC_PstB_phosphate_transporter 23 242 IPR005670 GO:0005315|GO:0016020|GO:0035435
Tsu02g00016 258 Gene3D - 19 257 IPR027417 -
Tsu02g00016 258 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 7 258 - -
Tsu02g00016 258 Pfam ABC transporter 40 183 IPR003439 GO:0005524
Tsu02g00016 258 ProSitePatterns ABC transporters family signature. 155 169 IPR017871 GO:0005524
Tsu02g00016 258 SMART AAA_5 49 239 IPR003593 -
Tsu02g00016 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 245 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00016 Tsu-Chr2 108232 110074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00016 37 242 Calmodulin-binding Proteins AT2G36910 33.019 1.22e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00016 K02068 - gmx:100791365 375.941