Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00008 ATGAGCATGCAACCAAGGGATAGGGTTCCTCGTCGTCAGGAATGGGTTCGCAAAGCACCCTCAACCACCGACCACCAATTACTACATCAGAATGAGAAGGGATTCATGAATTTAAGTGACTTTGACTTACATTTACCTCAACTGTTGCAAGAGATTCAAGACAAGCTCACCAAAGGCACTGTGGAATGCATGATTTGCTATGACACCGTGCGGAGGTCTGCTCCTATTTGGTCATGCTCCAGTTGCTACTCTATATTTCACCTCAATTGTACAAACAAGTGGGCTCGCGCACCCACCTCATCTGCATCTACCCACAACAGCAATCATTGGCGTTGCCCTGGTTGTCAAGCTATGCAACACACCTCATCCAATTCCATTAGGTACTTCTGCTTCTGCGGGAAGAGGCTCGACCCTCCATCTGATTTCTATCTCACGCCTCATTCTTGTGGAGAACCGTGCGCAAAGCCTCTTCAAAAGACTGGTAATCTTTGCCCTCATGTTTGTGTCTTGCAATGTCATCCCGGTCCATGTCCTCCCTGCAAAGCATTTGCTCCTCCCCGTTTGTGCCCTTGCGGCAAGATTACTATTACAACTCGATGTTCTGACCCCCTATCTCTTCTTACATGCGGTCAACAGTGTCAAAAGCTTCTTCAATGTGGGCGTCATCGGTGTGATCAAATTTGTCATCTCGGTCCCTGTGATCCTTGCCATGTACCAATTGATGCTTCTTGCTTTTGTAGTAATAAGTCTGAAGTTATCCTTTGTGGGGACATGGTAATGAAGGGTGAAATTAAAGCCGAAGGTGGAGTTTTTTCTTGTGGTTCCACTTGTGGAAACAAACTTGACTGTGGTAATCATTTTTGTACTGAGGTCTGTCATTTGGGCAGTTGTGTTGAGTGTCACTTGTTGCCAACCCGTGTTGAGACATGTTGTTGTAGGAAAACTAGATTGGAGAAGGAACGAAAGAGTTGTTTAGACCCAATACCTACATGTTCACAAATATGTGGCAAGTCCCTTCCTTGCGGGATCCATCATTGTAAACAGAAATGTCATGTTGGGGATTGTTCTCCTTGTTTGGATCTAGTCTCTCAGCAGTGTCGGTGTGGCTCAACTTCCAGAACTGTGGAGTGTTGTAAGACAACAattgaaaatgagaaatttaCTTGTGAAAAGCTTTGCAGACAGAAAAAGAATTGTGGGAGGCATCGTTGTAGTGAACGGTGTTGTCCACTTTCCAATTCAAATAATATTCTAAATGCAGATTGGGATCCACATTTCTGTTCCATTTCATGTGGAAAGAAGTTACGTTGTGGGCAACATGGGTGTCAGTCCCTGTGTCACAGTGGTCATTGTCCACCTTGTCTTCAAACTATATTCACTGAATTGGCATGTGCGTGTGGTAGGACTTCAATCCCTCCTCCATTGCCCTGTGGTACACCACTGCCCTCATGTCAGCTTCCGTGTTCAGTTCCTCAATCCTGTTGTCATCCAGCCTCTCATAGCTGTCATTATGGAGATTGTCCTCCTTGTCCGACACTTTTAGCAAGAGAATGTATTGGTGGTCATGTAGTCCTTAGGAACATACCTTGTGGCTCAAAGGATATTACATGTAATCAACTTTGTGGGAAGACTAGACAATGCGGTTTACATGCCTGTCAGAGATCATGTCATTCCCTGCCTTGTGATAATCAGCCTGTTCGGCAAGGTATTCGAACTTCTTGCGGACAAACATGTGGCGCTCCAAGGAGAGACTGTCGGCATACATGTATGGCTTCTTGTCACCCTTCATCTCCATGTCCAGATAGAAGATGTGAATTCCCTGTCACAATCACTTGTTCTTGTGGCCGTATAATGACAAATGTCCCTTGTGATGTTGGTGGTAGTGGTGCTAATTATATTGTTGATGCTATACATGAAGCTTCCATTATTCAAAAGTTGCACGTGTCACTTCAACCAATGGATGCAAATGGAAAAGAAGTTTCCCTCGGACATCGGAAACTGATGTGTAATGATGAGTGTGCTAAGTTGGAGCGTAAAAGGGTACTTGCAAATGCTTTTGACATTGCGGCTCCAAATCTagattttttccattttggtgaGAATTCTGGTGCTTCTTCTGAATTACTTGTTGGTCTTTTGAGGCGTGATAGTAAATGGGTTTTATCCGTCGAGGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAACTGCACATGGTCTAAAAGCCCATGTTTTTTGTCCCATGTTAAAGGAAAAGAGAGATGTAGTGAGGATGATTGCTGAGAGATGGAAGCTTACAATAAATGTAGTTGGTCTGGAGCCAAAGCAATTTATAATTGTATGTGTTGCCAAAAAATCAAGTGCTCCATCATGCATGCAAAGGATTAAGGGTACAACAATTGTACATGCGGCCCTTCCTCCTGCATTTGATCCTTTGGTAGACATGGACCCTCGATTTGTCGTCTCTTTTCCAGACTTACCAAGGAATGCAAATATCAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGCGAACTTGTTTGGTTAGATGATAGAAATGCATTGGCTGTTTTTAATGATCATGCTCGAGCTGCAACTGCAATGAGAAGGTTGGATCATGGAAGTGTTTATCAGGGAGCTATTATGGCTATTCCAAATGTAAGGGCACCTGTAGCATCTTTAGTTACTAATGCCTGGGGAGGAGCTGGGATAATGAAAGGAAGGGCAATGACAACATTGAAGGGTAATTTGTGGAAAAATGTTGTTATTCAAGAATCAGGTTGGAGCGAAGATTATTGGAGTGATGAGGAGTGGGCAACAAGTTCTACTAATATCAAGTCATCTATTTGGAAGAAAGAAGCACCAATATCTACTTCATCAAATCCTTGGAGTGTCTTAGATCAAGAATGGTCTTCAAGTTCGTCTGTTCTTGCTGCTGTTAAAGCTGAGACTTCTAGTAGAAGGACTGAAAGTAGTGTTGTGACAAAGTTGAAGCCTCATGATAATGGTTCAAATCTAGAACACCAGCATGGAAGAGCCTTTGACACTTCAGAAGTTTCTAATGTAGTAGATGATTGGGAGAAGGCTTGTGAATGA 3099 0.4298 MSMQPRDRVPRRQEWVRKAPSTTDHQLLHQNEKGFMNLSDFDLHLPQLLQEIQDKLTKGTVECMICYDTVRRSAPIWSCSSCYSIFHLNCTNKWARAPTSSASTHNSNHWRCPGCQAMQHTSSNSIRYFCFCGKRLDPPSDFYLTPHSCGEPCAKPLQKTGNLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKITITTRCSDPLSLLTCGQQCQKLLQCGRHRCDQICHLGPCDPCHVPIDASCFCSNKSEVILCGDMVMKGEIKAEGGVFSCGSTCGNKLDCGNHFCTEVCHLGSCVECHLLPTRVETCCCRKTRLEKERKSCLDPIPTCSQICGKSLPCGIHHCKQKCHVGDCSPCLDLVSQQCRCGSTSRTVECCKTTIENEKFTCEKLCRQKKNCGRHRCSERCCPLSNSNNILNADWDPHFCSISCGKKLRCGQHGCQSLCHSGHCPPCLQTIFTELACACGRTSIPPPLPCGTPLPSCQLPCSVPQSCCHPASHSCHYGDCPPCPTLLARECIGGHVVLRNIPCGSKDITCNQLCGKTRQCGLHACQRSCHSLPCDNQPVRQGIRTSCGQTCGAPRRDCRHTCMASCHPSSPCPDRRCEFPVTITCSCGRIMTNVPCDVGGSGANYIVDAIHEASIIQKLHVSLQPMDANGKEVSLGHRKLMCNDECAKLERKRVLANAFDIAAPNLDFFHFGENSGASSELLVGLLRRDSKWVLSVEERCKFLVLGKSRGTAHGLKAHVFCPMLKEKRDVVRMIAERWKLTINVVGLEPKQFIIVCVAKKSSAPSCMQRIKGTTIVHAALPPAFDPLVDMDPRFVVSFPDLPRNANISALVLRFGGECELVWLDDRNALAVFNDHARAATAMRRLDHGSVYQGAIMAIPNVRAPVASLVTNAWGGAGIMKGRAMTTLKGNLWKNVVIQESGWSEDYWSDEEWATSSTNIKSSIWKKEAPISTSSNPWSVLDQEWSSSSSVLAAVKAETSSRRTESSVVTKLKPHDNGSNLEHQHGRAFDTSEVSNVVDDWEKACE 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00008 1032 ProSiteProfiles Zinc finger RING-type profile. 63 116 IPR001841 -
Tsu02g00008 1032 ProSiteProfiles Zinc finger PHD-type profile. 60 118 IPR019787 -
Tsu02g00008 1032 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 2 1029 - -
Tsu02g00008 1032 CDD NF-X1-zinc-finger 273 319 - -
Tsu02g00008 1032 SMART znfxneu3 399 429 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 SMART znfxneu3 494 512 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 SMART znfxneu3 219 238 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 SMART znfxneu3 283 302 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 SMART znfxneu3 164 182 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 SMART znfxneu3 585 606 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 SMART znfxneu3 547 576 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 SMART znfxneu3 341 360 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 SMART znfxneu3 437 456 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 2 1029 IPR034078 GO:0003700
Tsu02g00008 1032 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g00008 1032 CDD NF-X1-zinc-finger 331 379 - -
Tsu02g00008 1032 ProSitePatterns Zinc finger PHD-type signature. 63 115 IPR019786 -
Tsu02g00008 1032 MobiDBLite consensus disorder prediction 1 19 - -
Tsu02g00008 1032 CDD RING-CH-C4HC3_NFX1 62 116 - -
Tsu02g00008 1032 MobiDBLite consensus disorder prediction 984 1020 - -
Tsu02g00008 1032 CDD NF-X1-zinc-finger 149 202 - -
Tsu02g00008 1032 CDD NF-X1-zinc-finger 209 257 - -
Tsu02g00008 1032 MobiDBLite consensus disorder prediction 984 1000 - -
Tsu02g00008 1032 CDD NF-X1-zinc-finger 427 479 - -
Tsu02g00008 1032 Pfam NF-X1 type zinc finger 547 562 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 Pfam NF-X1 type zinc finger 283 300 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 Pfam NF-X1 type zinc finger 166 181 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 Pfam NF-X1 type zinc finger 437 454 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 Pfam NF-X1 type zinc finger 502 511 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 Pfam NF-X1 type zinc finger 341 358 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 Pfam NF-X1 type zinc finger 399 410 IPR000967 GO:0005634|GO:0008270
Tsu02g00008 1032 Pfam NF-X1 type zinc finger 219 236 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00008 Tsu-Chr2 63474 67036 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Tsu02g00008 zf-NF-X1 0.096 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00008 K12236 - gmx:106799700 1630.54