Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05046 ATGAGAAACAGGAGAGGTAAGAAAGGTTGGATGGCTATTAAGATTGACTTGGAAAAAGCTTATGACCGCTTGAAGTGGGAGTTTATGAAAGAAACACTAGAGGATATTGGTATACCTATGAATATAGTGGATCTGATCTGGAGTTGTATTTCTTCTTCTAGTTTGAGGGTCCTTTGGAATGGGGATGCTGTAGAGGAATTCTATCCGTCAAGAGGCATAAAACAAGGGGATCCCCTCTCACCTTATCTTTTTGTACTATATAACTGGAGTGAGAAGGCTATTAGGAGAAAGACTACTGGGACTGGTAGGATGAGGTACTTGCGTAAAGTGCCTCGCAGATTCAAGATTGGATTTAGAGAAGGAAGGAGATACACATTTGACAACAGGCCACCGTCTTTAGCCCTGCGGCTTAATATCTCAACATGTTTGTGA 432 0.4167 MRNRRGKKGWMAIKIDLEKAYDRLKWEFMKETLEDIGIPMNIVDLIWSCISSSSLRVLWNGDAVEEFYPSRGIKQGDPLSPYLFVLYNWSEKAIRRKTTGTGRMRYLRKVPRRFKIGFREGRRYTFDNRPPSLALRLNISTCL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05046 143 PANTHER - 5 108 - -
Tsu01g05046 143 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 5 87 IPR000477 -
Tsu01g05046 143 Gene3D - 80 125 IPR011331 GO:0003735|GO:0005840|GO:0006412
Tsu01g05046 143 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 5 108 - -
Tsu01g05046 143 SUPERFAMILY DNA/RNA polymerases 7 89 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05046 Tsu-Chr1 57128765 57130884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05046 86 121 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 88.889 1.46e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05046 - - ccaj:109789145 143.28