Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05044 ATGGCTGCCAATCAAAAGTTTGTCATGATCTCCGGCATCACTGACACTGTTCAAGATTACTCTTTGTGTGTGAGGATTGTTAGGATGTGGGTTGTGCCTGAAGTGGCAAGACCGCAAAAGACAAACTCCATTGAAATGGTCTTCATGGATGCTGAGGGGACCCGTATTCATGCTTCTGTGAAGAGAACGCTGATTTATCGTTTTGAAAAGCAACTACGCGAGGGTGTTGGATATAACATGAATCTGTTTAGTGTTGTGATGAATACTGGTGAATATCGCACAACCAGACATGACTTTAAGATAGATGTAATGTACGACACTACATTCGAGAGGGTTTCCAATGATGTGATACCTCGAAATTTGTATACTTTTACTCCACCTGCTCAAATTTTCCATGATGATTTCAACCGAGATTTCTTGGTTGacGTCATTGGTGTTCTTACTGGTGTTGGACAAGAGAGGGAATATATCAGAAATAACACCAAGACAAAAATTGTTGTGATAGAGTTGGACAACAATGGTTATCGATTTCAAGTTTCGCTGTTTGGATCATATGTTGATGAATTGAACGCATTTCTTGCCACTGGTGACTCCAACAACGCTATTGTTGTCATATTGTTGGCAAAGTCGAAGATTTTTCAaggAAAACCTGTGTTGCAAAATTCAATTATTGCAACAAAGATCATGTTTAACCCAGATATACCAGAAGCTGCTGCCCTTAAGTCAAGgaTTGAAGCAAATAATGCTTCACCAACATTTGTGTTGAGTCAGCTTAAAGATACCTACAAGGTTACTTTTGAAGATGACATGTTGAGCGTCGCTCCTAGAACTACAATAGCAAATCTGAGGAATTGTAAGGAGGGTTCTGCTTATGTCATTTTGGCTACTGTGATTGATATGGTTACAGCAGGAGACTGGTGGTACAACGCATGTGTTTGTAACAAGAAGGTGTACCCTGCAGATAATATGTATTACTGCGAGAAGTGTAACCGTCATGTGATGAGTGTTACCCCGAGGTTTTGCCTCAAGCTTCGGGTTAGAGATGAAACAGGGATTACAACCTGTGTTCTCTTTGATCGTGATGCTACATTGCTGCTTAACAAAAGTGCTGCTGAATTATATGAATCTGTCAACATGGTAAATGGATGTGGAATCAAGCAAATATGGTCCATTTTCTGGGATGTTTGTTATAACTATATCTCCAGTTGTCTTAACTGTAATGTTTATGTTCCCATTCCCCAGAGGCCAGCTTCAGAAGTCGTTCCGAAGGAAATTAGTGATTTGTTTGGCAGGAAAATGCTTTTGAAACTCGAAATTGGTAGGGATAATGGTTCCAGGTTTGAACCATCATACAGGGTGAAGCGTGTTACCCAAGATGATTTCATGGTTGAGAGATTTGAAAGTTCAGTTGAATCTGAGGGTTCTGGATCTGATAAGGTGAGAGGTAAGATGAAAGTTTTGGATGATGGAATAGGCATCTCTGGAGTTGCTCAGGacctatattcaaaatttgctGGAGCAGAAATGACAAATGTTCTAAAGGTTGCTGAAAATGAAGAACAGAAAGGTGAAGAAAGTATTGAGATTGTTGATTTGTCTAAGGACTATCAAGAGTTTAGTCCAGATATGAAGAGGGTTTGCCCATTTGTGGATGCTGAATCTGACATGCCTGGAAAACATGTCTTGAAGAAAATCATCAAAGTTGAAAAGGATTAG 1716 0.3922 MAANQKFVMISGITDTVQDYSLCVRIVRMWVVPEVARPQKTNSIEMVFMDAEGTRIHASVKRTLIYRFEKQLREGVGYNMNLFSVVMNTGEYRTTRHDFKIDVMYDTTFERVSNDVIPRNLYTFTPPAQIFHDDFNRDFLVDVIGVLTGVGQEREYIRNNTKTKIVVIELDNNGYRFQVSLFGSYVDELNAFLATGDSNNAIVVILLAKSKIFQGKPVLQNSIIATKIMFNPDIPEAAALKSRIEANNASPTFVLSQLKDTYKVTFEDDMLSVAPRTTIANLRNCKEGSAYVILATVIDMVTAGDWWYNACVCNKKVYPADNMYYCEKCNRHVMSVTPRFCLKLRVRDETGITTCVLFDRDATLLLNKSAAELYESVNMVNGCGIKQIWSIFWDVCYNYISSCLNCNVYVPIPQRPASEVVPKEISDLFGRKMLLKLEIGRDNGSRFEPSYRVKRVTQDDFMVERFESSVESEGSGSDKVRGKMKVLDDGIGISGVAQDLYSKFAGAEMTNVLKVAENEEQKGEESIEIVDLSKDYQEFSPDMKRVCPFVDAESDMPGKHVLKKIIKVEKD 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05044 571 SUPERFAMILY Nucleic acid-binding proteins 6 114 IPR012340 -
Tsu01g05044 571 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 21 373 - -
Tsu01g05044 571 SUPERFAMILY Nucleic acid-binding proteins 123 247 IPR012340 -
Tsu01g05044 571 Gene3D - 116 255 IPR012340 -
Tsu01g05044 571 Gene3D - 268 467 IPR012340 -
Tsu01g05044 571 PANTHER REPLICATION FACTOR A 1, RFA1 21 373 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu01g05044 571 Gene3D - 6 114 IPR012340 -
Tsu01g05044 571 SUPERFAMILY Nucleic acid-binding proteins 276 398 IPR012340 -
Tsu01g05044 571 CDD RPA1_DBD_A_like 21 109 - -
Tsu01g05044 571 Pfam Domain of unknown function DUF223 45 140 IPR003871 -
Tsu01g05044 571 Pfam Replication factor-A C terminal domain 291 376 IPR013955 -
Tsu01g05044 571 CDD RPA1_DBD_C 286 461 IPR013955 -
Tsu01g05044 571 CDD RPA1_DBD_B_like 142 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05044 Tsu-Chr1 57121712 57124585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05044 48 373 Core DNA Replication Machinery Family AT5G08020 24.189 3.30e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05044 - - mtr:MTR_2g048560 385.185