Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05034 ATGTCGGAAGCACCGTCTCAACCACCACCACCCCCACCCGCCACCGAAACCCCTCCTCCATACTGGTGCTATCACTGCGACAAACGCGTCTCCGTTGAAACCGTCGCAAATCTCCCCGACCTAATTTGCGGTGATTGCAAAAACGGTTTCGTGGAATCCATAACCACACCTTCTCGTTCTCGTTCACCTTCCTCTTCCTCCGATGATCCCTATTTTGGTTCTCAATTTCTTCAGGTTCTTCGCCTAATCGCTCAATCTTCGCGTGAAGACGACGCGTCTCCTCCACCTCCTCCAAGTCGTTCACCAGAGAACGATTTCCTCAGGATCGAACTCGGTGGTTGGGACCACAACGACGAAGATaacgatgatgatgaatttcATAACGACGGTGAAGGTGAAGATACCGAAGGTACCGTTGAAGAGCAAGAAGATCGATCCGGAAACGAGGATCCTCATGGGGACGATGAAGATATGAGACGAAGGAGGCGCGATCTGTTGCGTCATCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCAGAATCGGATCTTGGATTGGGCGGAGATTCTAATGGGACTGGAAGATAATTCAATTGAGCTTCGTCTTCAGATGCCGGAATCAGACCGGTATGTCGGCAATCCGGAGGATTATGTTGATGCGGCGGAGTATGAGGCGTTGCTGCAGACGCTGGCGGAGAGTGATGGAAGTGGAAGGAGAGGAGCTCCCCCGGCTTCGAAGTCAGCGGTGGAGGCATTACCGATGGTGAAGATTGAGTTGGAGAGTGAGGTGGTTGCTTGTGCTGTATGTAAGGATATGCTCGGTGTTGGAGATATGGCGAAGAGATTGCCGTGTGGGCATGAGTATCATGGAGATTGCATTGTTCCATGGTTGAGTTGTAGAAATTCTTGTCCTGTTTGCAGGTTTGAGCTTCCAACTGATgataaggagtatgaagaagaGAGAGCTTCGGGTTCTGGTCGTGGTGATGGTGGTGGCGGAGCTTCCACCATTTGA 1017 0.4985 MSEAPSQPPPPPPATETPPPYWCYHCDKRVSVETVANLPDLICGDCKNGFVESITTPSRSRSPSSSSDDPYFGSQFLQVLRLIAQSSREDDASPPPPPSRSPENDFLRIELGGWDHNDEDNDDDEFHNDGEGEDTEGTVEEQEDRSGNEDPHGDDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIELRLQMPESDRYVGNPEDYVDAAEYEALLQTLAESDGSGRRGAPPASKSAVEALPMVKIELESEVVACAVCKDMLGVGDMAKRLPCGHEYHGDCIVPWLSCRNSCPVCRFELPTDDKEYEEERASGSGRGDGGGGASTI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05034 338 MobiDBLite consensus disorder prediction 52 73 - -
Tsu01g05034 338 MobiDBLite consensus disorder prediction 141 160 - -
Tsu01g05034 338 ProSiteProfiles Zinc finger RING-type profile. 267 308 IPR001841 -
Tsu01g05034 338 SUPERFAMILY RING/U-box 259 314 - -
Tsu01g05034 338 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g05034 338 MobiDBLite consensus disorder prediction 112 160 - -
Tsu01g05034 338 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 35 324 - -
Tsu01g05034 338 SMART ring_2 267 307 IPR001841 -
Tsu01g05034 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 314 IPR013083 -
Tsu01g05034 338 MobiDBLite consensus disorder prediction 116 140 - -
Tsu01g05034 338 Pfam Zinc finger, C3HC4 type (RING finger) 267 307 - -
Tsu01g05034 338 MobiDBLite consensus disorder prediction 1 19 - -
Tsu01g05034 338 MobiDBLite consensus disorder prediction 318 338 - -
Tsu01g05034 338 MobiDBLite consensus disorder prediction 87 106 - -
Tsu01g05034 338 MobiDBLite consensus disorder prediction 52 74 - -
Tsu01g05034 338 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 324 - -
Tsu01g05034 338 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05034 Tsu-Chr1 57047104 57048651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05034 178 320 C3H Transcription Factor Family AT5G01980 47.333 5.79e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05034 - - gmx:100802200 473.781