Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05028 ATGTCTCAGACAACCGGTGTCCCACCTGCTTTCCAGTCCATTAAATCGCTGCCACCCGAGTTCAAGTTTGATAATAATCGAAACTCTGGTATTGTGGAAAAGAATGGAAACGGTAAATTGAGAAGCACTGGTCTGATTGGATCAAATGGTCGTGTTACAACAGTAGGGGAGGTTTCAGAAGCAGACAGCCGTGCTGGTGGCATGGATCTCTTTGACGAAGAATCTCCATATGGTGGAAACGGTGAATCATTTGAAGACAGGCCATTGTATGCTAATGAAGACTCAATATCTGCTTCACCGCCCCAACCATCAATTTCAACGTCCTCTAGCGAAAGCAGGTGGAGTGATACAAATGCTTATGCTTCAAAAAAGAAGCTTCGGTCTTGGCTTCAACTTTCTAATGGGGACTGGGAACTGGTGAAGATAATATCAACTTCTGGAACAGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAAGGTGAAAGATGAAAGTTTGGTATCAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCATCAGTTTTATACAACCTGCAACATAGATACAATCAAGATATGATCTATACAAAAGCAGGGCCTGTTTTGGTGGCAGTAAATCCCTTTAAGAAAGTTCCTCTGTATGGTATTGACTATATTCAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTTTATGCAATTACAGACTCAGCCATCAGAGAGATGACACGAGATGAAGTTAATCAATCAATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCTATGCAATACCTTGCTGCCCTTGGTGGTGGAAGTGGAATAGAGCATGAAATATTAAAGACTAATCCAATACTAGAAGCCTTCGGTAATGGAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATCCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACATTTTTGTTAGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGtcatatcatatattttatcaGCTATGTGCTGGAGCACCACAATCTCTCAGGGAGAGGCTAAATCTACGAAGTGCGGAAGACTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTACTGGTGTTGATGATGCAGAAGAATTCCGCATAGTCACGGATGCTCTGGATGTTGTCCACATTAGCAAAGGAGACCAAGAGAATGTATTTGCAATGCTTGCGGCAGTATTATGGTTAGGAAACATATCATTTACTGTGATCGATAATGAAAATCATGTTCAAGCTGTTGAGGATGAGGGGCTGTTCAGCACTGCCAAGTTGATCGGCTGTGACGTTGAAGATCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGTCCGTAATGATATTATTGTCCAGAAATTGACGCTATCTCAGgCCAGTGATGCAAGAGATGCTTTGGCAAAGTCTATATATGCATGTCTGTTTGATTGGTTGGTTgaacaaataaacaaatcacTTGCTGTTGGCAAAAGACGAACTGGAAGATCTATCAGTATTCTAGATATTTATGGCTTTGAGTCGTTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTACAGCAACACTTTAATCGTCATTTATTCAAGTTGGAACAGGAGGAATATATCCAAGACGGCATTGATTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAACCACTGGGGCTACTATCCTTGTTAGACGAAGAGTCCACTTTTCCAAATGGTACGGATTTGACATTTGCTGATAAGCTTAAGCAGCATTTGAAGTCTAATTCATGCTTCAGAGGAGAGCGAGAGAAAGCCTTTACTGTGCGTCATTATGCTGGAGAGGTCAGTTATGATACAACTGCATTCCTAGATAAGAACAGGGACCTATTGCACGTGGATTCCATCCAACTTTTATCCTCAAGCAAATGTCACCTTCCTCAGATATTTGCATCCTATATGCTTACTCAGTCTGAGAAGCCTGCAGTTGGTCCCTTACACAAGTTAGGTGGAGCCGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGCACAATTGTTTCAACTAATGCAACGTTTAGAGAGCACCACACCTCATTTTATTCGCTGCATTAAGCCCAATAACCTCCAATCACCTGGATCATATGAGCAAGGACTTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTAGAAGTGGTTCGGATATCAAGATCAGGCTTTCCAACTAGAATGTCTCATCAAAAGTTTGCTAAAAGATATGGTTTTCTTCTCCTTGAAAATGTTGCATCTCAGGATCCACTTAGTGTGTCTGTTGCTATTCTTCATCAGTTTAACATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAATTATTCTTCCGAACTGGGCAGATTGGAGTGCTTGAAGATACTAGGAATCGTACCCTCCATGGCATTTTACGTGTACAAAGTTGCTTCAGGGGTTATCAAGCTCGTTGCCTTCGCAAGGAGCTTTGGAGAGGAATCACTACTCTTCAGTCATTTATTAGAGGAGAAAAAACCAGAAAGGGGTTTGCAACTTCGCTTCAGAGACATAGAGCTGCTGTTATTATACAGAAGCACGTGAAAACAACATATGCAAGAAACAGAATGAAAATGACCACTGGTGCTGCAGTTGTGATTCAATCATTTATTCGTGGATGGTTAGTCAGAAGATGCTCAGGAGATATAGGATTTTTAAAATCCGGAGGCATGAagACTAATGAGGCAGATGAGGTTCTGGTGAAGGCGTCTTTCCTTGCTGAATTACAACGTAGGGTGCTTAAGGCTGAAGCTGGtctgagagagaaagaagaagaaaatgacaTCCTTCACCAACGTCTTCAACAGTATGAGAGCAGATGGTCTGAATatgaactaaaaatgaaatccATGGAAGAAGTATGGCAGAAACAAATGAGATCCCTACAGTCTAGCCTATCCATTGCAAAGAAGAGTCTTGCTATGGATGATTCCGAAAGAAATTCAGATGCTTCTGTCAATGCAAGTGATGACAAGGAATACAGCTGGGATGTTGGAAATAATCACAGGCGGCAAGAAAGCAGTGGAACACGATCCATGAGTGCTGGTTTGAGCGTTATAAGTCGGTTGGCTGAAGAATTTGAGCAAAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAAATTGAAGCAAGTTTAAATCCAGACCAAGAGCTTAGAAGATTAAAACAAATGTTTGAAGGTTGGAAAAAGGACTATGCCGGAAGACTGCGTGAAACAAAGgttattttaaataaacttgGAAGTGAAGATAGTTCAATAGAAAAAGCCAAGAAGAAATGGTGGGGAAGAAGGAACAGTACTAGGATaagttga 3522 0.3961 MSQTTGVPPAFQSIKSLPPEFKFDNNRNSGIVEKNGNGKLRSTGLIGSNGRVTTVGEVSEADSRAGGMDLFDEESPYGGNGESFEDRPLYANEDSISASPPQPSISTSSSESRWSDTNAYASKKKLRSWLQLSNGDWELVKIISTSGTESVISLPDGKVLKVKDESLVSANPDILDGVDDLMQLSYLNEPSVLYNLQHRYNQDMIYTKAGPVLVAVNPFKKVPLYGIDYIQAYKRKAIESPHVYAITDSAIREMTRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEHEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPQSLRERLNLRSAEDYKYLRQSNCYSITGVDDAEEFRIVTDALDVVHISKGDQENVFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLFSTAKLIGCDVEDLKLTLSTRKMKVRNDIIVQKLTLSQASDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFADKLKQHLKSNSCFRGEREKAFTVRHYAGEVSYDTTAFLDKNRDLLHVDSIQLLSSSKCHLPQIFASYMLTQSEKPAVGPLHKLGGADSQKLSVATKFKAQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAKRYGFLLLENVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARCLRKELWRGITTLQSFIRGEKTRKGFATSLQRHRAAVIIQKHVKTTYARNRMKMTTGAAVVIQSFIRGWLVRRCSGDIGFLKSGGMKTNEADEVLVKASFLAELQRRVLKAEAGLREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASDDKEYSWDVGNNHRRQESSGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQIEASLNPDQELRRLKQMFEGWKKDYAGRLRETKVILNKLGSEDSSIEKAKKKWWGRRNSTRIS 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05028 1173 Gene3D - 546 738 - -
Tsu01g05028 1173 MobiDBLite consensus disorder prediction 1035 1049 - -
Tsu01g05028 1173 Gene3D - 782 849 - -
Tsu01g05028 1173 Gene3D Myosin VI head, motor domain, U50 subdomain 415 523 - -
Tsu01g05028 1173 MobiDBLite consensus disorder prediction 1035 1074 - -
Tsu01g05028 1173 MobiDBLite consensus disorder prediction 95 114 - -
Tsu01g05028 1173 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 123 172 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 SMART iq_5 898 920 IPR000048 GO:0005515
Tsu01g05028 1173 SMART iq_5 921 943 IPR000048 GO:0005515
Tsu01g05028 1173 SMART iq_5 849 871 IPR000048 GO:0005515
Tsu01g05028 1173 SMART iq_5 872 894 IPR000048 GO:0005515
Tsu01g05028 1173 ProSiteProfiles Myosin motor domain profile. 176 848 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 Pfam Myosin head (motor domain) 178 836 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 SMART MYSc_2a 170 849 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 CDD MYSc_Myo8 190 836 IPR036022 -
Tsu01g05028 1173 Gene3D - 358 414 - -
Tsu01g05028 1173 MobiDBLite consensus disorder prediction 28 56 - -
Tsu01g05028 1173 ProSiteProfiles IQ motif profile. 852 879 IPR000048 GO:0005515
Tsu01g05028 1173 ProSiteProfiles IQ motif profile. 922 951 IPR000048 GO:0005515
Tsu01g05028 1173 Gene3D - 852 900 - -
Tsu01g05028 1173 Gene3D - 901 942 - -
Tsu01g05028 1173 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1172 - -
Tsu01g05028 1173 MobiDBLite consensus disorder prediction 1 114 - -
Tsu01g05028 1173 Coils Coil 968 1016 - -
Tsu01g05028 1173 Gene3D Kinesin motor domain 175 781 IPR036961 -
Tsu01g05028 1173 ProSiteProfiles IQ motif profile. 875 902 IPR000048 GO:0005515
Tsu01g05028 1173 Pfam IQ calmodulin-binding motif 876 893 IPR000048 GO:0005515
Tsu01g05028 1173 Pfam IQ calmodulin-binding motif 925 940 IPR000048 GO:0005515
Tsu01g05028 1173 Pfam IQ calmodulin-binding motif 854 868 IPR000048 GO:0005515
Tsu01g05028 1173 PRINTS Myosin heavy chain signature 534 562 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 PRINTS Myosin heavy chain signature 206 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 PRINTS Myosin heavy chain signature 587 615 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 PRINTS Myosin heavy chain signature 260 285 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 PRINTS Myosin heavy chain signature 302 329 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g05028 1173 PANTHER MYOSIN 9 1172 - -
Tsu01g05028 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 893 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05028 Tsu-Chr1 57005596 57016339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05028 7 1171 Myosins gene family AT1G50360 74.979 0.0 1784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05028 - - gmx:100801124 2041.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g05028 01 57005596 57016339 Tsu01g05028 01 57005596 57016339 ECH