Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05022 ATGTCTAACGCCGACGGAACAACAACAACTACAACCACTAACGGTTCAATCATTGACCAAAACCGTCAACAGTTAGCCGTTAAAAAACCTCCTTCAAAAGACCGTCACAGTAAAGTCGACGGCCGTGGACGCCGTATTCGTATGCCAATCATATGCGCCGCTCGTGTCTTCCAACTCACGCGCGAATTAGGTCACAAATCCGATGGTCAAACAATCGAATGGCTCCTCCGTCAAGCTGAACCATCAATCATCGCCGCCACCGGTACCGGAACTACTCCGGCAAGTTTCTCATCTCTCTCCGTTTCGCTTCGCGGTTCCAACAATTCACTTCCGTCACCTTCGTCAACTTCGCTAGAGCACAAGCCTCTTCTCTCTCCGTCTCCGTTCATTCTCGGTAAACGTATTCGCACCGACGatgattcttcatcttcttctgcTAACGCTAAAGAAGACGCTCTTTCTGTTGCTTCTCTTTCTACACCGGCGGCTCTTTGGGCGTTACCTTCACGGCCTGATTTTGGACAAATTTGGAGTTTCGCTGCCGCCGCTGCTGGTGCTCCTCCACCGGAAATGGTGGTTCAGTCTTTGTCtcatcagcaacaacaacatcaagCTTCTTTCTTCGCTCATCATCATCAGCAACAGCAACAAGCTATGGGTGAAGCTTCAGCTGCTAGAGTTGGGAATTATCTTCCTGGTCATCTGAATTTGCTTGCTTCGTTGTCTGGTGGACATGGAAATTCTGGTCGGGGAGACGATGAGCATCATTAA 771 0.4695 MSNADGTTTTTTTNGSIIDQNRQQLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSVSLRGSNNSLPSPSSTSLEHKPLLSPSPFILGKRIRTDDDSSSSSANAKEDALSVASLSTPAALWALPSRPDFGQIWSFAAAAAGAPPPEMVVQSLSHQQQQHQASFFAHHHQQQQQAMGEASAARVGNYLPGHLNLLASLSGGHGNSGRGDDEHH 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05022 256 MobiDBLite consensus disorder prediction 28 44 - -
Tsu01g05022 256 Pfam TCP family transcription factor 32 158 IPR017887 -
Tsu01g05022 256 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 252 - -
Tsu01g05022 256 ProSiteProfiles TCP domain profile. 32 86 IPR017887 -
Tsu01g05022 256 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 252 IPR005333 GO:0003700
Tsu01g05022 256 MobiDBLite consensus disorder prediction 1 27 - -
Tsu01g05022 256 MobiDBLite consensus disorder prediction 101 123 - -
Tsu01g05022 256 MobiDBLite consensus disorder prediction 1 44 - -
Tsu01g05022 256 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05022 Tsu-Chr1 56963251 56965462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05022 12 254 TCP Transcription Factor Family AT5G23280 65.060 3.63e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu01g05022 TCP 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05022 K16221 - gmx:100799005 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g05022 01 56963251 56965462 Tsu01g05022 01 56963251 56965462 ECH