Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05020 ATGTCTTCTGGCGGCGATGGCGGTGGCGGCGCTGTAGGTAAGCTTTTCTTCTGCCACGTATGCAGTCGGAGAGTTACCTGCTCCGATGATGCCGAACCTTTTTGCCCAATCTGTTTCCAAGGTTTCCTCGAAGAATGTAATCAAATTCCCGAACCTAACCCTAACCCTAGCTTTCACTTCAGCTTCAGCAACGACGATTCCTCTGATACCGATTCCGATTTCCCTTTCCATCCATTCGCTCTTCTCCCTCTGTTGTTATCTTCTGCTTCAATTTCCAGGTCTCGACCCGAATCCGAGAGTTTTGACCCGTtcacttttcttcagaatcacCTTCAGGGCCTTCACGCCGACGGTGCTAACATTCAATTCGAGATCAATCatccttctgaatctgaaccAGGTTTACGCGTTCCCTCTAGTTTTGGTGATTATTTTCTCGGTCCTGGCCTTGAACAATTGATTCAGCAACTCGCTGAGAATGATCCTAACCGTTATGGAACACCACCTGCATCGAAAGACGCGGTTAAGAATCTTCCGACAGTAACTGTTGATGATGAATTGTTGAACTCGGAATTGAACCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGTTTGCAGGTGAAGCAAATGCCCTGCAAGCATGTGTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAATTCATGCCCTGTTTGTCGATATGAATTGCCAACTGATGATGCTGATTATGAGAATCGTGGTAGCGGTAACACTGGCGAGGGGTTGAGGTCTGTTGTTGATGGTAATAGTACTGGTAGTGGTGCTGGCAATGTTGGTGGAGGAGCGGGGAACAGACCTGTCCACAGGACTTTTAGAATATCTCTGCGGTATCCTTTTGGTGCTGGTGACTCTACCCAGGACTCAGGTGAAAGGGGATTGGGAAATAGGCAAGAGGATTTGGATTGA 954 0.4549 MSSGGDGGGGAVGKLFFCHVCSRRVTCSDDAEPFCPICFQGFLEECNQIPEPNPNPSFHFSFSNDDSSDTDSDFPFHPFALLPLLLSSASISRSRPESESFDPFTFLQNHLQGLHADGANIQFEINHPSESEPGLRVPSSFGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAVKNLPTVTVDDELLNSELNQCAVCQDEFEKGLQVKQMPCKHVYHDDCLLPWLELHNSCPVCRYELPTDDADYENRGSGNTGEGLRSVVDGNSTGSGAGNVGGGAGNRPVHRTFRISLRYPFGAGDSTQDSGERGLGNRQEDLD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05020 317 MobiDBLite consensus disorder prediction 294 317 - -
Tsu01g05020 317 SUPERFAMILY RING/U-box 174 242 - -
Tsu01g05020 317 PANTHER OS06G0101300 PROTEIN 12 300 - -
Tsu01g05020 317 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Tsu01g05020 317 CDD RING-H2_RNF126_like 194 236 - -
Tsu01g05020 317 Pfam Ring finger domain 193 236 IPR001841 -
Tsu01g05020 317 MobiDBLite consensus disorder prediction 247 281 - -
Tsu01g05020 317 SMART ring_2 195 235 IPR001841 -
Tsu01g05020 317 MobiDBLite consensus disorder prediction 253 273 - -
Tsu01g05020 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 300 - -
Tsu01g05020 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 242 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05020 Tsu-Chr1 56937200 56940203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05020 139 262 C3H Transcription Factor Family AT5G01980 45.968 4.05e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05020 K11982 - gmx:100785289 372.089