Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05013 ATGGAAAACGACACCACCGCCACCAACAACGCCGCCGCCGCAACCAACGCCACGACCAAACTTGTTTCAGGCGGAGTCAAATCTAACAACCACATCAATGAAGAAGAACATTCCAATTTGAATAGCGAGGAAAATATACcagaaaaaatggaagaaaaagaagaagatgaaaacgaagaagaacaacaacaaccaacTGGATCTGAAACCACCGCTCAACAACCTTCGAGAACGCCTTTCACTAATCTCAGCCAAGTCGATGCTGACCTTGCCCTCGCTCGTACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTATGGAAGTTGGGAAGGTGGGAGCTATTTGCATGACGATGGAGATGATTTTGATGATCTACATGATGGCACTGATGAGGATGAGGATGACgacgatgaagatgatgataatgaggAGGAATatgaagaagaggaagatgCATTTGATGTCCATGCTCATGCTACTGTTGGAGAACATGATAATCCGGTTATTGAATTTGACCCAGAGCTGTTTTCAAGTGATGAAGCCTACGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTGGCTCTTGCTGGAATACATGATCAGGACACTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAGCTTTCATATGAGgaaCTACTGGCATTGGGTGAGGTAGTAGGTACTGAGAGCAGAGGTCTTTCAAATGATACTCTTGCCTGTTTACCTTCAGTCATCTATAAGACGGGGAGTGATCAACATGGGAGCAATGATTCgTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACAATTCTTTCCTGCAAACATCTGTACCATCCTGAATGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTCTGCAGTACAGAGGTATCTACTTCTGGGAGCAACTTGTAG 1011 0.4115 MENDTTATNNAAAATNATTKLVSGGVKSNNHINEEEHSNLNSEENIPEKMEEKEEDENEEEQQQPTGSETTAQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDEDEDDDDEDDDNEEEYEEEEDAFDVHAHATVGEHDNPVIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDQDTEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSNDTLACLPSVIYKTGSDQHGSNDSCVICRVDYEDDESLTILSCKHLYHPECINNWLKINKVCPVCSTEVSTSGSNL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05013 336 MobiDBLite consensus disorder prediction 64 85 - -
Tsu01g05013 336 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 30 334 IPR043312 -
Tsu01g05013 336 MobiDBLite consensus disorder prediction 132 160 - -
Tsu01g05013 336 ProSiteProfiles Zinc finger RING-type profile. 285 326 IPR001841 -
Tsu01g05013 336 SMART ring_2 285 325 IPR001841 -
Tsu01g05013 336 Pfam Ring finger domain 283 325 IPR001841 -
Tsu01g05013 336 MobiDBLite consensus disorder prediction 49 63 - -
Tsu01g05013 336 MobiDBLite consensus disorder prediction 30 48 - -
Tsu01g05013 336 MobiDBLite consensus disorder prediction 113 160 - -
Tsu01g05013 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 332 IPR013083 -
Tsu01g05013 336 CDD RING-H2_PA-TM-RING 285 325 - -
Tsu01g05013 336 SUPERFAMILY RING/U-box 276 331 - -
Tsu01g05013 336 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 30 334 - -
Tsu01g05013 336 MobiDBLite consensus disorder prediction 1 85 - -
Tsu01g05013 336 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05013 Tsu-Chr1 56893707 56899997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05013 76 229 C3H Transcription Factor Family AT3G19910 52.903 2.82e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05013 K19045 - gmx:100787418 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g05013 01 56893707 56899997 Tsu01g05013 01 56893707 56899997 ECH