Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05011 atgaaGTTAATGCATTGCCATGAACTGTTCAAGCCAGTTACTATCTTGATTCTAGTTAACTTAGCTCTAGCTTTTGTCAATTTACTTCTTAAAATGGTCCTCAATGAAGGAATGGATTACATGTCCATTGTAACATATCGACAAGCTATTTCTTTTATCTTCATGGCACCTATTGCATGGTTCTATGAAAGGAAACACAAATTGGAGGCTCACATAATATGTCTCCTTTTTCTCTCTGCTCTTGTAGGAGTAACAATCCCCCAATACTTGTTTCTTCTTGGACTTCAGTATACATCTGCTACATTCTCATGTGCATTCCTCAACATGGTGCCTGTATTTACATTCATCATGTCACTTCCATTTGGGATAGAGAAGGTGAACATGAAAATCAAGAGTGGTAAAGCCAAAATCTTGGGAACTGTTGTGTGCATTGGTGGAGTTTTGATATTAGCCCTTTATAAAGGAATTTCCTTTAACAGCCCACAATCTCAACACATAGCCAATAGAGATACAAGTGCACCTCCCAAGTTAGAGAAATGGATTATAGGTTCAATACTTCTGACTGTAGGTGGCATCATGTGGTCTTCTTGGTTTGTTATACAAGCTAAGATTAGCAAAAAGTATCCATGTCAGTACTCTAGCACTGCTATTTTGTCACTTTTTGCTGCTATTCAATCAGCAATATTAACTTTGGTCATCAAGGGAAACAATGCCTCATGGATCCTCAAAGGAAAGCTAGAAATATTGTGTGTAATATATGCTGGATTGGTGGGGTCAGGCCTGTGTTATGTGGCAATGTCATGGTGTGTCAAACAAAGAGGTCCAGTTTTTACTGCAGCATTTACCCCTCTTTTACAAATATTTGTGGCTGTACTTGATTTCACTATACTAAAGGAGGAAATATACTTAGGAAGTATTGCAGGTTCTGTGTTGGTTATTGTTGGCATGTATATTCTCTTATTGGGAAAAAGCATGGAGGGAGAGCAATGTGTCATGAAGGATACACAAGCAAATCAAGATGTAGAATGTCAATGA 1035 0.3778 MKLMHCHELFKPVTILILVNLALAFVNLLLKMVLNEGMDYMSIVTYRQAISFIFMAPIAWFYERKHKLEAHIICLLFLSALVGVTIPQYLFLLGLQYTSATFSCAFLNMVPVFTFIMSLPFGIEKVNMKIKSGKAKILGTVVCIGGVLILALYKGISFNSPQSQHIANRDTSAPPKLEKWIIGSILLTVGGIMWSSWFVIQAKISKKYPCQYSSTAILSLFAAIQSAILTLVIKGNNASWILKGKLEILCVIYAGLVGSGLCYVAMSWCVKQRGPVFTAAFTPLLQIFVAVLDFTILKEEIYLGSIAGSVLVIVGMYILLLGKSMEGEQCVMKDTQANQDVECQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05011 344 PANTHER WAT1-RELATED PROTEIN 10 342 - -
Tsu01g05011 344 Pfam EamA-like transporter family 182 320 IPR000620 GO:0016020|GO:0016021
Tsu01g05011 344 Pfam EamA-like transporter family 13 150 IPR000620 GO:0016020|GO:0016021
Tsu01g05011 344 PANTHER WAT1-RELATED PROTEIN 10 342 IPR030184 GO:0016021|GO:0022857
Tsu01g05011 344 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 324 - -
Tsu01g05011 344 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05011 Tsu-Chr1 56880854 56882960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05011 8 254 Nodulin-like Gene Family AT3G30340 45.418 9.07e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05011 - - gmx:100802053 554.288