Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05008 ATGGCGGAGGAACAGAACGACGACGTCagattaaaaatcaaaatcactgtCACACTCAGAATTCCTCCTCCAGAGGCAGAACCAACTACTGTGGATGCTAACGATGAAACAGTGCCGTCAAATGGTGATGAAGTGGCACGAGCTTTGGATGCTGTCACTGAAACGGTGTCTCTGAACGACGGTGAAGGTTCAATTAATGGCAATGGCGATGATGTGACTGTAGCAGCTGAAAAACAATCTACAGTGCAAACCTTAGATAATGGCAATGGCGATGATGCTATAGCAGTAGTAGCTGAAGATCCAGCTCCGGCGAAGGTGATGAACGacagaaacaaaaagaaacgCGGAAGAAAGAGTATTGCAGAAACTCAAAAGATGAAGGAAGAGGCAGCGTTAAGGAAAATGATCGAAGAAactgatggtgatgatgatgacgtGAAATCCGGTGGCTCTGTTTCTGCTGAATTTGCCACCAGCGttaaaaagagaagaataatTGTTTTTAGTTCTTCTGAAGAAGAAAACGAGGAAGCTGAACAAGAGAGGGAAAACGATGAAGCTGCAGAAGAGGGAGAAAATGGTGGAAAACATGAACTCAAATGCATTGAATCTCAGGTGGCAAAATTCAACAGGAGAAATTCTAAGGGGATTGAAGAGGGGTCGTCAAGGTGGTGCCACCAATGTAAAAAGGACAAGGCCATGATTGTCAATTGCACAAAATGTGAAAGGAAAAGATTTTGCGTACAATGTGCAAATAAATGGTATCCTAAATTGAAAGAGAGTGATATTGCTGAGGCATGTCCCGTATGCCGTGATATATGCAATTGCATAGCATGCTTGCGATCTTCTAAACTCATCAAAGAAATGAAGCATACAGCTAAAAGTGAAACCAACAAAGATGAGGAGGTTGAGTTTAATAAGTATTTGTTGAAAGGACTTCTTCCATATTTAAGACAGTTGGATGAAGAACAGATGATTGAGAAGGCAACAGAAGCCAAGAGACAAGGGCTCTCACTCTCAAAGTTACAAATAAAATCGGCTGATTATTCTAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGACTACCATAGAAGTTGTACAAAATGCCCTTTTGACATTTGTCTCTTCTGTTGCTGCGAGCTTCGTGGTGGGAAGCTCCTAGGTGGTGCAGATCCAATTGAGTTTGAGTTTATCTTCCGAGGGCGTGATTATTTGCATGGTGGAAAAGaagaggaaataaaaaaaaatgaacctCGTTCTGCTGCCCAGCCTGAGATCCGTGAATGGTCAAGATCTGGATGGCATGCAAATAGTGATGGCAGCATTCCCTGTCCAAAAGCTAATAATGATTGTGATCATGGTTTCCTTGAGCTGAGAAGCATACTTGGACCAAATCGCATCTCTGAGTTAGTATGCAAAGCAAAAGAACTTGAAGAAACACTCAATCTACAAGATGCACAAGAGACTCTTGATAGTAGTTGTTCTTGTTTGAAGCCTGTTAAAAATGCCGATGATATACACAATAACATAAGGAAGGCAGCTTCTCGTGAAGATTCCATTGATAACTTCTTATACTGTCCTAGGGCTGTAGATCTACACAAAGAGGATTTTAAACATTTTCAATGGCATTGGGGCAAAGGGGAGCCAGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTCTAAGCTGGGAACCACTTGTCATGTGGCGCGCATTCCGTCAGATAAGCAATACAAAGCACAAGTCACTTTTGGATGTGAAGGCAATTGATTGTTTAGATTGGTGCGAGGCAGAAATTAATGTGCACCAATTCTTTACTGGGTACACAAAAGGTCGCTTGGATTGGCTTAAATGGCCACAGgtattgaaattgaaagattGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATCTTCTTTGCCATATAAAGAATATACAAATCCTTTCAAAGGTGTTCTTAATCTTGCTACGAAGTTGCCTGTTGGTGCTCTAAAGCCAGACATGGGCCCAAAAACGTATATTGCTTATGGATTTGATCAGGAGCTTGGGCGGGGTGATTCTGTAACTAAGCTCCATTGTGATATGTCCGATGCAGTAAATTTGTTGACTCATATTGCTAAAGTGGAATTGGAATCTGAGGGCATTAAAGCCATTAAAAAACTGACACCAAAACACCTTGATCAAGACAAGAAAGAGCTACATCTTCATTGTGAAAGTCAGGATGGAGAGACCAATGATGGTGTGCTTGATAATTCATCGTCTTCTATAAATGCTTCAGAAGAGCAAAATAGGGACCAAGTCATGCAAAATGAAAAGCGATTATGCAATGGGAAGGTTGTTGATCCAGTTCGTGAACACTCAGTTGCCGATGATGCCCTTCCTTCTGAAGTACAGCCCAAAGAGGTTGATGAAGTGACcgtgaaaaaagaaaatagttttTTGGTAGGGGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCTAAATTGGAGGAATATCTAAAGAATCATTTCAGAGAGTTCAGGCATGTGCACTGCTATCCTTTAAAGCAGGTTGTTCACCCTATCCATGATCAGACATTTTATTTGACTATTGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCAGAAAATGTTGGTGAGTGTTTTCGTTTGACAGAGGAGTTCCGGAAACTTCCAATCAATCACAGGTCTGCAGAGGACAAATTGGAGGTGAAGAAAATGATTGTATATGCTATGCTTGATCTGGTTGAAACGTTGGAGAAAGCAAGGTCTCTAGAAACCGAGGTTCGAAAGTAA 2979 0.4005 MAEEQNDDVRLKIKITVTLRIPPPEAEPTTVDANDETVPSNGDEVARALDAVTETVSLNDGEGSINGNGDDVTVAAEKQSTVQTLDNGNGDDAIAVVAEDPAPAKVMNDRNKKKRGRKSIAETQKMKEEAALRKMIEETDGDDDDVKSGGSVSAEFATSVKKRRIIVFSSSEEENEEAEQERENDEAAEEGENGGKHELKCIESQVAKFNRRNSKGIEEGSSRWCHQCKKDKAMIVNCTKCERKRFCVQCANKWYPKLKESDIAEACPVCRDICNCIACLRSSKLIKEMKHTAKSETNKDEEVEFNKYLLKGLLPYLRQLDEEQMIEKATEAKRQGLSLSKLQIKSADYSKDERVYCDNCKTSIFDYHRSCTKCPFDICLFCCCELRGGKLLGGADPIEFEFIFRGRDYLHGGKEEEIKKNEPRSAAQPEIREWSRSGWHANSDGSIPCPKANNDCDHGFLELRSILGPNRISELVCKAKELEETLNLQDAQETLDSSCSCLKPVKNADDIHNNIRKAASREDSIDNFLYCPRAVDLHKEDFKHFQWHWGKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNTKHKSLLDVKAIDCLDWCEAEINVHQFFTGYTKGRLDWLKWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTNPFKGVLNLATKLPVGALKPDMGPKTYIAYGFDQELGRGDSVTKLHCDMSDAVNLLTHIAKVELESEGIKAIKKLTPKHLDQDKKELHLHCESQDGETNDGVLDNSSSSINASEEQNRDQVMQNEKRLCNGKVVDPVREHSVADDALPSEVQPKEVDEVTVKKENSFLVGGDSLDGALWDIFRREDVPKLEEYLKNHFREFRHVHCYPLKQVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPINHRSAEDKLEVKKMIVYAMLDLVETLEKARSLETEVRK 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05008 992 Pfam JmjC domain, hydroxylase 837 933 IPR003347 -
Tsu01g05008 992 SMART cupin_9 643 950 IPR003347 -
Tsu01g05008 992 MobiDBLite consensus disorder prediction 172 188 - -
Tsu01g05008 992 MobiDBLite consensus disorder prediction 754 781 - -
Tsu01g05008 992 Coils Coil 472 492 - -
Tsu01g05008 992 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Tsu01g05008 992 Coils Coil 976 992 - -
Tsu01g05008 992 Coils Coil 168 191 - -
Tsu01g05008 992 MobiDBLite consensus disorder prediction 758 778 - -
Tsu01g05008 992 ProSiteProfiles JmjC domain profile. 662 950 IPR003347 -
Tsu01g05008 992 MobiDBLite consensus disorder prediction 171 195 - -
Tsu01g05008 992 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 101 983 IPR045109 GO:0032454|GO:0033169
Tsu01g05008 992 Gene3D Cupin 532 959 - -
Tsu01g05008 992 SUPERFAMILY Clavaminate synthase-like 541 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05008 Tsu-Chr1 56832536 56871973 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu01g05008 JmjC 1.1e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05008 K15601 - gmx:100780803 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g05008 01 56832536 56871973 Tsu01g05008 01 56832536 56871973 ECH