Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05005 ATGGTTTTCCCCCGTGGTATTCAAGTTCTTCTTGGTTTCAGTTTTTGCATCTTGAGTGGTATGGTTCATATAATTTTCTTTGTTCCATGTGGACAATATCATTTTGGCATTGGAATTTTGGTGCAGCTTCATTCCACATCTGATGAGAACACAGCCGAATCTTTCCAATCATATGCTCCTGGCGAGGATTCTGTTCAAAGCTCTTCAAAGTACTCAAGCAGACAGGGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTGGctcttgaagaaaatgattccGATGGCTTAGAAGAGGAGCGATCTTTGCATGACAGTGAACAATATACACGGCCAATGCATGAAATTACCTTCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTAACTGCTTTGCTTGCTGAGGTTGGACTGAACATCCAAGAGGCACATGCTTTTTCCACAAATGATGGTTACTCGTTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAGAAGCTAAAAGAAACTTTGGAAAAAGAAGTCTTGAAGATTGAGAGACACGAGAGGTCCAGTCAGCAATCAAGATCATCTGTCGATGAGCGTGATGAAGCATCGATGAAACATGAACTGGATCGTTTGACAATTCCAAATGATGGGACAGATGTTTGGGAAATAGATCCGAAACATTTGAAATATGGAACTCAAATTGCATCCGCGTCATACGGTGAACTATTTAAAGGTACATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTTAAGGCTGAGCATGTAAGTTCAGAAATGCAGAAAGAGTTCGCTCAGGAAGTCTACATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATGGGAGCATGTACCAAGCCCCCACGCTTATGCATAGTTACAGAGTTTATGTCTGGTGGAAGTGTGTATGACTACCTACATAAGCAGAAAGGGTTTTTCAAATTTCCTACCCTGCTCAAAGTTGCAATTGATATTTCTAAAGGAATGAACTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGACTGCCAATCTTTTGATGGATGAAAACGGTGTTGTAAAGGTCGCCGATTTTGGGGTTGCTAGAGTGAAAACTCAGTCCGGAGTTATGACAGCAGAAACTGGGACGTATCGTTGGATGGCTCCTGAGGTTATAGAACACAAGCCATATGATCACAAGGCTGATGTATTTAGTTTTGGAGTTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAGTATTTGACCCCTCTACAGGCAGCTATAGGAGTGGTACAAAAGGGTTTACGGCCCACCATCCCCAAGGGCACTAATGCaaagtttgttcaaattcttgAGAGGTCTTGGCAGCAAGATCCAACTTTAAGACCCGATTTCTCTGAAATCACCGAGATCCTGCAGCAGTTGGCGAAGGAGGTTGGAGATGAAGGAGAGGGGCGCAAGGACAAGTCAGGAGGATTTCTGTCTGCCCTCAGACGAGGTCATCACTAA 1539 0.4211 MVFPRGIQVLLGFSFCILSGMVHIIFFVPCGQYHFGIGILVQLHSTSDENTAESFQSYAPGEDSVQSSSKYSSRQGIHPPPAFGSSPNLEALALEENDSDGLEEERSLHDSEQYTRPMHEITFSTDDKPKLLSQLTALLAEVGLNIQEAHAFSTNDGYSLDVFVVEGWPYEETEKLKETLEKEVLKIERHERSSQQSRSSVDERDEASMKHELDRLTIPNDGTDVWEIDPKHLKYGTQIASASYGELFKGTYCSQEVAIKVLKAEHVSSEMQKEFAQEVYIMRKVRHKNVVQFMGACTKPPRLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDISKGMNYLHQHNIIHRDLKTANLLMDENGVVKVADFGVARVKTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGVVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKGTNAKFVQILERSWQQDPTLRPDFSEITEILQQLAKEVGDEGEGRKDKSGGFLSALRRGHH 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05005 512 ProSiteProfiles ACT domain profile. 120 195 IPR002912 -
Tsu01g05005 512 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 496 - -
Tsu01g05005 512 CDD STKc_MAP3K-like 239 482 - -
Tsu01g05005 512 CDD ACT_TyrKc 118 185 - -
Tsu01g05005 512 MobiDBLite consensus disorder prediction 97 116 - -
Tsu01g05005 512 MobiDBLite consensus disorder prediction 489 512 - -
Tsu01g05005 512 Pfam Protein tyrosine and serine/threonine kinase 233 482 IPR001245 GO:0004672|GO:0006468
Tsu01g05005 512 MobiDBLite consensus disorder prediction 52 86 - -
Tsu01g05005 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Tsu01g05005 512 Gene3D Phosphorylase Kinase; domain 1 223 311 - -
Tsu01g05005 512 SUPERFAMILY ACT-like 117 182 IPR045865 -
Tsu01g05005 512 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 68 496 - -
Tsu01g05005 512 SUPERFAMILY Protein kinase-like (PK-like) 218 481 IPR011009 -
Tsu01g05005 512 MobiDBLite consensus disorder prediction 489 505 - -
Tsu01g05005 512 MobiDBLite consensus disorder prediction 188 214 - -
Tsu01g05005 512 PRINTS Tyrosine kinase catalytic domain signature 409 431 IPR001245 GO:0004672|GO:0006468
Tsu01g05005 512 PRINTS Tyrosine kinase catalytic domain signature 453 475 IPR001245 GO:0004672|GO:0006468
Tsu01g05005 512 PRINTS Tyrosine kinase catalytic domain signature 390 400 IPR001245 GO:0004672|GO:0006468
Tsu01g05005 512 PRINTS Tyrosine kinase catalytic domain signature 307 320 IPR001245 GO:0004672|GO:0006468
Tsu01g05005 512 PRINTS Tyrosine kinase catalytic domain signature 344 362 IPR001245 GO:0004672|GO:0006468
Tsu01g05005 512 Coils Coil 170 193 - -
Tsu01g05005 512 ProSiteProfiles Protein kinase domain profile. 233 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g05005 512 SMART serkin_6 233 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g05005 512 Gene3D Transferase(Phosphotransferase) domain 1 312 500 - -
Tsu01g05005 512 MobiDBLite consensus disorder prediction 102 116 - -
Tsu01g05005 512 MobiDBLite consensus disorder prediction 52 75 - -
Tsu01g05005 512 Gene3D - 118 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05005 Tsu-Chr1 56803096 56809506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05005 41 511 MAP Kinase Kinase Kinase AT4G35780 63.907 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Tsu01g05005 PK_Tyr_Ser-Thr 2.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05005 - - gmx:100805180 775.778