Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05004 ATGCAATCTATTAGAAAATCATTCAAATCTTATGCTTCTTACAATAAAAAGAATTCTAGTAGATTCTCCCAAGACCCAGATTCCGAACACGAACAACTCCCTATTCTTCACGCCCAACAACACCACCGTCAACCTTCTCCTATGGCCGGAGACGTCGTCGTTAAAATTGACGACGGCGGTGAGCCTTCACGAGAGAATAAGATTTGGAGAGAGTCCAGCTATGATTTCTGGAATGATACCGGTGACAATGttggtgatgatagttttgatTTTCGGAATAAAACTCGTGAGGATCCACCGTCGCAGCTAATCGGAAAGTTTTTGCATAAACAGAAAGCTTCCGGTGAGATGTCTTTGGATATGGATTTGGAGATGGATGAGCTTCAAAATGAAGGTGATAGCGATGGAAAGTTAACGCCGGTGGAAGAATCTCCTACAATGATACAACGTGAGCTTAAGGTTTCGTTTGAGGAACCTTCTTCTTCGAATGTAATTGAAACGGTTAATGATTCTGTAAGAAGAAGACATGTTAATGATTCACCTTCCACGGCTGATTGTTCTAGACCTCCGTTTCCGCCGAATCGTGGTCGTTCTCCGTCACCGGCTCCGGCTGGTAGCGATTGTGAGGTTGTAAGGTGTACTTCTAATAGTTCCTTTCATCCTTCCTTTGAAAGGAATCTTTCCATGCAGAGAAAATCAACGTTATTGAAAACCAAAACTAAGTCTAGATTAATGGACCCGCCGGATGATCCGGTTGATAGAAGGTCGGGTCGGGTTGCTAAATCGGGTCAACTTTTGTCTGGGTTTATTGGGAAGAAAGGGGATGAGGAGGAAGACGATCCTTTCATGGAAGAGGATTTTCCTGATGAGTATAAGAAAACACAATTTAGTCTTTGGATTCTTCTTGAATGGttgagtttgattttgattattggTGCATTAGTAACAACTTTGAGTGTTCCttttttgagagagaagaaTTTGTGGCAACTCTTATTATGGAAATGGGAGGTTATGATTCTTGTTCTAATATGTGGTAGATTGGTTTCTGATTGGTTTATTAGAATTGCTGTGTTTTGTATTGAAAGAAATTTTCTATTGAGAAAAAGGGTACTTTACTTTGTGTATGGTGTGAAGAAAGCTGTGCAAAATTGTATTTGGTTGGGACTTGTTTTAATTGCATGGCATTTTCTCTTTGATGAGAGAGTTCAAAGGGAGACAAAAAGTGATTTCCTTCAATATGTTACCAAGGTTTTGGTTTGTTTCTTGGTGGGGACTTTGGTGTGGTTGTTGAAAACTTTAATGGTTAAGGTTttagcttcttcttttcatgtTAGTACATATTTTGATAGAATTCAAGAGTCACTGTTTAATCAATTCGTAATCGAAACACTTTCGGGGCCACCTTTGGTGGAAATTCGAAAggctgaagaggaagaggaaagACTTGCTGAAGAGGTTCAAAAGTTGCAGAATGCTGGGGTTAACATACCTGCTGATCTTAGAGAATCTGCATTTTCTACCAAGAGTGGAAGGTCGAAGAGTGGAATGCTTCCGAAAAGCCCTGTTGTTAAGAGTGCCAGGTTTTCAAGGCCACTCTCAAAGAAATCTGATGATGGAATTGGGAATGGTGGTGGGATAACTATTGATCACTTACATAAGCTGAATCCAAATAATGTGTCTGCATGGAATATGAAAAGGTTGATGAATATGGTTCGGCACGGGGCACTTACTACATTGGATGAACAAATACTTGATTCCAGTGTTGATGTTGATGAGCATGCCACACAAATCAGAAGTGAAAATGAGGCTAAAGCGGCGGCTAAGAAAATCTTTCAGAATGTTGCTAGGCGCGGTTGCAGGTTTATATACCCTGAGGACTTGATGCGTTTTATGCGAGAAGATGAAGCTATAAAAACCATAAATCTCTTTGAAGGAGCTGTAGATACTGGGAAAATCAGTAAATCCGCCTTGAAAAATTGGGTGGTGAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACAGCAGTGAACAAACTTCATCGCATGCTCAATTTTTTAGTTGCCATTATCATACTCGTTATTTGGCTCTTGATATTGGAAATCGCCACCAccaaatttcttctttttgtgagCTCACAACTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAAACCGTATTTGAAGCAATCATATTCTTATTTGTCATGCACCCGTTTGATGTGGGAGATAGATGTGAAATTGATGCAACCCAGATGGTTGTAGAAGAAATGAACATATTGACTACCGTATTTCTTAGATACGATAATCTCAAGATAACGATTCCTAACGCTGTTCTTGCTACTAAGGCCATAAATAATTTCTACCGTAGTCCTGACATGGGAGATGCTATTGAATTCCTTATCCATGTAGCTACCCCAGCCGAAAAGTTGTCACTCATAAAACACAAAATACATAGTTTCGTTGACAACAAGAAGGAGCACTGGTATCCTTCACCTTTTATAGTCTTGAAGGATCACGAACAATTGAACATGGTGCGAGTGGCGATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGATTTATCAGGAGGTCTCTTCTTATTGAAGAGTTGATAAAGATTTTCAAAGAACTCGACATTCAATACCGTCTCATGCCTCTTGACATTAACGTTAGAGCTGTGCCTACCACTTCTGATCGTCTTCCACCTAGTTGGACATCATTCACAAATTGA 2769 0.3853 MQSIRKSFKSYASYNKKNSSRFSQDPDSEHEQLPILHAQQHHRQPSPMAGDVVVKIDDGGEPSRENKIWRESSYDFWNDTGDNVGDDSFDFRNKTREDPPSQLIGKFLHKQKASGEMSLDMDLEMDELQNEGDSDGKLTPVEESPTMIQRELKVSFEEPSSSNVIETVNDSVRRRHVNDSPSTADCSRPPFPPNRGRSPSPAPAGSDCEVVRCTSNSSFHPSFERNLSMQRKSTLLKTKTKSRLMDPPDDPVDRRSGRVAKSGQLLSGFIGKKGDEEEDDPFMEEDFPDEYKKTQFSLWILLEWLSLILIIGALVTTLSVPFLREKNLWQLLLWKWEVMILVLICGRLVSDWFIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCIWLGLVLIAWHFLFDERVQRETKSDFLQYVTKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRKAEEEEERLAEEVQKLQNAGVNIPADLRESAFSTKSGRSKSGMLPKSPVVKSARFSRPLSKKSDDGIGNGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALTTLDEQILDSSVDVDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLMRFMREDEAIKTINLFEGAVDTGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDATQMVVEEMNILTTVFLRYDNLKITIPNAVLATKAINNFYRSPDMGDAIEFLIHVATPAEKLSLIKHKIHSFVDNKKEHWYPSPFIVLKDHEQLNMVRVAIWPTHRMNFQDMGERFIRRSLLIEELIKIFKELDIQYRLMPLDINVRAVPTTSDRLPPSWTSFTN 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05004 922 MobiDBLite consensus disorder prediction 22 37 - -
Tsu01g05004 922 MobiDBLite consensus disorder prediction 1 67 - -
Tsu01g05004 922 MobiDBLite consensus disorder prediction 126 207 - -
Tsu01g05004 922 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 919 - -
Tsu01g05004 922 PIRSF Memb_At2g17000 24 922 IPR016688 -
Tsu01g05004 922 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g05004 922 Pfam Mechanosensitive ion channel 689 893 IPR006685 GO:0016020|GO:0055085
Tsu01g05004 922 SUPERFAMILY Sm-like ribonucleoproteins 737 796 IPR010920 -
Tsu01g05004 922 Coils Coil 470 496 - -
Tsu01g05004 922 Gene3D - 747 796 IPR023408 -
Tsu01g05004 922 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 919 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05004 Tsu-Chr1 56791615 56797026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g05004 51 919 Mechanosensitive Ion Channel Family AT1G78610 58.206 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05004 K22048 - gmx:102665658 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g05004 01 56791615 56797026 Tsu01g05004 01 56791615 56797026 ECH