Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04991 ATGTCTCTTATTGTGATATATAGACACTCTTGCAATCATCTAAATTTTCCTTGCATTGCATACTTTCAGCTTCACAGACATAATGTAAAATACATCAATCTCAGCAAGTTAGTTTTTGCTTTTACAATTTCAATGGCTTGTAGTAGAAACCAAAGTGTCTCTTCACCTAGCATGCCATGGAAATATGATGTGTTTGTGAGCTTTAGAGGTGAAGACACGCGCAACAATTTCACTGATCATCTTTTTGGCGCTCTTCATAAAAAAGGCATTGTTACCTTCAGGGATGATACAAAGCTGAAGAAAGGGGAACATATATCATCTGAGCTTCTACAAGCCATTGAAGGATCCCgtatttttattgttatctTCTCAAGAAACTATGCCTCTTCCACATGGTGCTTGCAAGAATTGGCAAAAATTGCTGATTGCATTGATGTATCAGGACAGACTGTTTTACCTATTTTCTATGATGTGAATCCATCTGAGGTACGAAAGCAAAGCGGAGATTATGAAAAATCCTTTCTTAAGCATGAAGAAATATTCAAAGAAAACTTAGAAGAAGTGCAAAGATGGAGGGATGCCCTGGCACAAGTAGCGAATCTCTGTGGTTGGGATGTAAGAGACAAGCCACAATTTGCAGAGattgaaaaaattgttaaaGAGGTTACATGTTTATTAGGAAACAAATCTTCAACTTTACCCGGCGATATAGTTGGGATGCACCCACGAATGGAAGAATTAAAAAAGCTTCTGAATTTGGACTTAGATAATGATGATGTTCGAGTTGTTGGGATTTGTGGAATGGGTGGAATAGGGAAGACAACACTTGCTACTGCTTTGTATGCTAGAATCTCTAATCAATTTGATGCTTGCTGCTTTATTGATGATGTAAGTAAAACTTATGGAGATTATGGCCCAATTGGAGTACAAAAGCAACTTCTTTATCAAACTctaaatgaagaaaatattcAGATATGCAATCTTTCTATGGCATCCAATTTGATTCGAACCAGGCTATGTCAAACAAAATCCCTTGTAGTTTTTGATAATGTTGATCAAGTTGAACAACTGGATAAATTGACCATGGCACGAGAATGGCTAGGCAGAGGGAGTAGAATCATCATAATTTCTAGAGATGGCCATATCCTGAGAGAGCATGGAGTAGATGAAGTTTACAAAGTTCGGCTCTTGGATCATAATAATGCCCTTCAATTGTTTTGCAGGAAAGCTTTCAAAAGTGACGATATAATGAGTGGTTACATATCCTTGACAGATGATGTACTAACATACGCCAATGGCCTTCCATTAGCCATTAAAATGTTGGGCACATTTTTGTATGGTCGAGATGCCTCTGAATGGAAAAGTGCATTGTCAAGATTAAGGGAGAATCCAAGAACAGATATTATGAATGTACTCCGAATTAGTTTTGATGGACTAGAGGATACAGAAAAGGATATATTTCTAGATATTGCTTGTTTCTTTTATGAAAAAGGGGAGGCCTATGTGAAGAGAGTTTTAGATTTTCGTGGATTTCATCCTGAAATTGGTTTAAGAGTTCTCGTTGATAAGTCATTCATAATCCTTGAGAAGGGGAGAATTTTTATGCATGATTTGTTCAAAGAACTGGGCAAGAGTATTGTTAGAGAAAAATCACCCAAAGAACCGAGAAAGTGGAACAGGATGTGGGACTACCAGGATGTCCACAATGTTATCTCAGAAAACATGGCAACAGGAAACCTTGAAGCCATAGTTCTGCGGCGTTATCCAGAAAATATTGACAAAATACAAGCAATGTCAACATTGAGGGCTGAAGCTTTAGCGCAAATGAGTCGCCTTAAATTGCTCATGCTGTGGAATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGGTATCTATGTTGGGATAAATATCCTTTCACTTGTTTGCCATCAAGTTTTGAGCCGGATAAACTTGTTGAACTGATCCTACCTCATAGCAACATCAGACAACTATGGGAGGGCACAAAGCCTCTACACAATTTGACACGTATTGATCTCTCTCACTCTAAAAATCTTATTATGATGCCAATTTTTTTGATGATTCCAAATCTTGAGTTGCTAGATCTTGAAGGATGTATAAAACTCGTTCAGATTGATCCATCCATTGGTATACTAAGAAGgcttttcaaattaaatttgaaaaattgtaaaaatctGATCAGTATTCCTAACAACATTTTTGGTCTGAGTTCTCTCAAACATCTCAATATCTCAGGCTGTCCAAAATTACTTAATAATCAGCTGTTACAAAGACGAATAAAACATTTAGAGATGCTTGATAACAAAGAAAGTACTACCCAATACCAGTCAACATCCTGCATCCCGTCCTTTCGATTTTCTTTTTTTCGCAAACGTAAAGATTCAGACGGTTTATTATTGCCTTCGTTGTCTCGTTTGTCATGTTTGCAATATCTTGACCTAAGTTTCTGCAATCTTCTTCAAATCCCTAATGCTATTGGGTGGTTACATTCTTTAGAAATCCTAAATTTGGGGGGAAACAACTTTGTTACACTACCTTCAAGCATCAAAGAACTTTCCAAACTTAGACAATTGAACTTGGAGCATTGTAAGCAGCTGAAATATTTGCCTGAGCTTGCATCAAATACTGTCTTGCCAATAGGAAAAACATTTTTTGGTAGATATGTAGCTggattatatatttttgactGCCCCAGTTTAGTTGAGATGGAGTGCTGTTATAGAATGGCTTTTTCTTGGATGATACAACTCCTTCAGGTGCACATGCAATCTGATCTTCCAATGGGTCAGATTGATATTGTTATTCCAAGATCTCAAATTCCAATATggtttaaaaaacaaaatgttggtAGTTCAATAAACATGGATCCATCACCTATTATGCATGACAACAATTGGATAGGTGTTGCTTGTTGCTTAACATTTGTGGCACATGATGATCCAAATAACTTAGGTGAAGGATGGTCACCTCATATTGGCTTCGGTTTTCAAAGTAAACAGCGTGGACGGTTTCCAGTTATTCCCATCCATCTTGAAAAAGATTTGGTGACAGTTGAGTTAGAACACCTTTTGCTGATTTTTTTCACTAGGGGAGAATTTATTGATTATTATATGAGCTATATAACAAAGGGATTGCATGATATTAGTAGTATTATTGAACTGTCAGCTGTAGTTGATCAGCCCCTTGGTTTGCATTTGGAGGTAAAAAATTGTGGTTATCGTTGGATATCTAAGGTGGATTTGGAACAGTTAAACCCACAAATGATGCACAGTGGAAGTGGAAATTCATCGGTTCAAATCAAGTATTTAACAAATAATTAG 3351 0.359 MSLIVIYRHSCNHLNFPCIAYFQLHRHNVKYINLSKLVFAFTISMACSRNQSVSSPSMPWKYDVFVSFRGEDTRNNFTDHLFGALHKKGIVTFRDDTKLKKGEHISSELLQAIEGSRIFIVIFSRNYASSTWCLQELAKIADCIDVSGQTVLPIFYDVNPSEVRKQSGDYEKSFLKHEEIFKENLEEVQRWRDALAQVANLCGWDVRDKPQFAEIEKIVKEVTCLLGNKSSTLPGDIVGMHPRMEELKKLLNLDLDNDDVRVVGICGMGGIGKTTLATALYARISNQFDACCFIDDVSKTYGDYGPIGVQKQLLYQTLNEENIQICNLSMASNLIRTRLCQTKSLVVFDNVDQVEQLDKLTMAREWLGRGSRIIIISRDGHILREHGVDEVYKVRLLDHNNALQLFCRKAFKSDDIMSGYISLTDDVLTYANGLPLAIKMLGTFLYGRDASEWKSALSRLRENPRTDIMNVLRISFDGLEDTEKDIFLDIACFFYEKGEAYVKRVLDFRGFHPEIGLRVLVDKSFIILEKGRIFMHDLFKELGKSIVREKSPKEPRKWNRMWDYQDVHNVISENMATGNLEAIVLRRYPENIDKIQAMSTLRAEALAQMSRLKLLMLWNLNFSGSLNFLSSELGYLCWDKYPFTCLPSSFEPDKLVELILPHSNIRQLWEGTKPLHNLTRIDLSHSKNLIMMPIFLMIPNLELLDLEGCIKLVQIDPSIGILRRLFKLNLKNCKNLISIPNNIFGLSSLKHLNISGCPKLLNNQLLQRRIKHLEMLDNKESTTQYQSTSCIPSFRFSFFRKRKDSDGLLLPSLSRLSCLQYLDLSFCNLLQIPNAIGWLHSLEILNLGGNNFVTLPSSIKELSKLRQLNLEHCKQLKYLPELASNTVLPIGKTFFGRYVAGLYIFDCPSLVEMECCYRMAFSWMIQLLQVHMQSDLPMGQIDIVIPRSQIPIWFKKQNVGSSINMDPSPIMHDNNWIGVACCLTFVAHDDPNNLGEGWSPHIGFGFQSKQRGRFPVIPIHLEKDLVTVELEHLLLIFFTRGEFIDYYMSYITKGLHDISSIIELSAVVDQPLGLHLEVKNCGYRWISKVDLEQLNPQMMHSGSGNSSVQIKYLTNN 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04991 1116 SUPERFAMILY L domain-like 535 885 - -
Tsu01g04991 1116 ProSiteProfiles TIR domain profile. 60 226 IPR000157 GO:0007165
Tsu01g04991 1116 Pfam TIR domain 61 222 IPR000157 GO:0007165
Tsu01g04991 1116 Gene3D - 396 480 IPR042197 -
Tsu01g04991 1116 Pfam Leucine Rich Repeat 654 673 IPR011713 -
Tsu01g04991 1116 PRINTS Disease resistance protein signature 262 277 - -
Tsu01g04991 1116 PRINTS Disease resistance protein signature 338 352 - -
Tsu01g04991 1116 PRINTS Disease resistance protein signature 431 445 - -
Tsu01g04991 1116 PRINTS Disease resistance protein signature 860 876 - -
Tsu01g04991 1116 Pfam Leucine rich repeat 819 874 IPR001611 GO:0005515
Tsu01g04991 1116 Gene3D Ribonuclease Inhibitor 550 790 IPR032675 -
Tsu01g04991 1116 Gene3D Ribonuclease Inhibitor 801 927 IPR032675 -
Tsu01g04991 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 490 IPR027417 -
Tsu01g04991 1116 Gene3D - 225 392 IPR027417 -
Tsu01g04991 1116 SUPERFAMILY Toll/Interleukin receptor TIR domain 55 204 IPR035897 -
Tsu01g04991 1116 Pfam NB-ARC domain 254 466 IPR002182 GO:0043531
Tsu01g04991 1116 Gene3D - 58 224 IPR035897 -
Tsu01g04991 1116 SMART till_3 61 201 IPR000157 GO:0007165
Tsu01g04991 1116 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 232 1054 - -
Tsu01g04991 1116 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 232 1054 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04991 Tsu-Chr1 56706189 56710555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04991 62 868 WRKY Transcription Factor Family AT4G12020 29.106 5.09e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04991 - - mtr:MTR_4g080777 1782.69