Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04990 ATGGGTGTGGCTCAGAACGCTGACGGCATGGACGATGGTACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGAGTGGCTGGACCATTGGTCATTCTTGAGAAAGTTAAGGGACCCAAATATCAAGAGATTGTCAATATTCGTTTGGGTGATGGAACTACCCGGCGTGGACAAGTTCTTGAGGTTGACGGTGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATCGACAATAAATTTACGACCGTACAGTTCACTGGAGAGGTCTTAAAAACTCCTGTATCACTGGACATGCTTGGCCGGATATTTAACGGTTCAGGAAAACCAATTGATAATGGTCCGCCAATTTTACCCGAGGCTTACCTGGATATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATATCTACAATTGACGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTTTCAGCCGCTGGTCTCCCCCATAATGAAATTGCTGCACAAATTTGTCGTCAGGCTGGGTTAGTCAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGGAGGAGGAGAAGACGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATCGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTCGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAGGTGCCAGGAAGACGTGGTTATCCTGGGTATATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAGGGGCGTAAAGGCTCTATTACCCAAATTCCAATTCTAACCATGCCTAATGAtgATATTACACATCCAACTCCTGATCTTACCGGATATATTACTGAGGGGCAGATATACATTGATAGGCAGTTGCATAATAGACAGATATACCCACCAATCAATGTTCTTCCATCGCTATCTCGGTTGATGAAGAGTGCTATTGGGGAGGGAATGACTAGGAAGGATCATTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTTGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGTTGTATCTGGAATTTCTGGACAAGTTTGAGAGGAAGTTTGTCGCCCAGGGAGCCTACGACACCCGCAATATATTCCAGTCTCTAGATCTTGCTTGGACTTTACTTAGGATTTTCCCCCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGAGATGCTGGTAATTGA 1470 0.4388 MGVAQNADGMDDGTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04990 489 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 489 - -
Tsu01g04990 489 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Tsu01g04990 489 Gene3D - 29 488 - -
Tsu01g04990 489 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 378 IPR000194 GO:0005524
Tsu01g04990 489 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 489 IPR022879 -
Tsu01g04990 489 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Tsu01g04990 489 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Tsu01g04990 489 CDD V_A-ATPase_B 92 380 - -
Tsu01g04990 489 ProSitePatterns ATP synthase alpha and beta subunits signature. 369 378 IPR020003 GO:0005524
Tsu01g04990 489 Hamap V-type ATP synthase beta chain [atpB]. 18 487 IPR022879 -
Tsu01g04990 489 PIRSF V-ATPsynth_beta/V-ATPase_B 12 489 IPR022879 -
Tsu01g04990 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 384 IPR027417 -
Tsu01g04990 489 CDD ATP-synt_V_A-type_beta_C 388 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04990 Tsu-Chr1 56697410 56704324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04990 1 489 Primary Pumps ATPases(2) AT4G38510 97.137 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04990 K02147 - gmx:100814088 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04990 01 56697410 56704324 Tsu01g04990 01 56697410 56704324 ECH