Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04985 ATGTTATCGGAGTTAGTGAACTTTTTGAAGGCCTGCTTTCGGCCGGGTACGGACGGACATGCACGGACAGCTTCAGATGCTGGCGGTAAACAGGATGGACTATTGTGGTACAAAGATTTGGGGCAGCACTTGTGTGGTGAATTTTCAATGGCTGTAGTCCAAGCCAATAACTTGTTGGAGGATCAGAGTCAGGTTGAATCTGGTAGTTTAAGCTTGACCGAGTCTGGTCCTTGTGGAACATTTGTTGGTATCTATGATGGACATGGCGGGCCTGAGACGTCACGGTTTATCAACAATCATCTATTTCAACATCTCAAGAgATATActtctgagcaacaatcaatgTCAGTGGATGTAATTCGCAAGGCAATCCAAGCAACAGAAGAGGGGTTTATGTCGCTGGTTTCACAACTGTGGTCAATTTCACCGCAAATTGCAGCAGTTGGATCGTGCTGTCTTGTTGGTGTTATTTGTAATGGAACCCTTTATATAGCAAACCTCGGTGATTCTAGGGCTGTTTTGGGAAGAGTAGTCAAGGCAACTGGTGAGGTTTTAGCTATGCAATTGTCAACGGAGCACAATGCATCAATAGAGTCTGTAAGACAGGAGCTTCATTCTATGCATCCCGATGATTcaaatattgttgttttgaagcATAACGTATGGCGTGTGAAGGGAATTATACAAATTTCTAGATGTATTGGTGACGTGTATTTGAAAAAAGCTGAATTCAATAGAGAACCATTATATGCCAAGTTTCGACTTAATGAGCCTTTCAAGAGGCCAATACTGAGCTCAGAACCATCAATATTAGTGCATCCGTTGCAACCTCATGATCAATTCATTATATTCGCATCTGATGGGCTTTGGGAGCACTTCAGCAATCAGGAAGCAGTTGATATAGTTCAAAAGAATCCTCGCGCTGGAATTGCGAGGAGGATGGTGAAAACTGCGCTTAAAGCAGCGGCAAAGAAGAGAGAAATGAGATATTCagatttaaataaaattgatcGTGGAGTTCGGCGGCATTTCCATGATGATATAACTGTGATTGTTGTGTATCTTGATTCAAATCTCGTGAGTAGGGCAAGCACCGTGAAGTTCCCTAGTATTTCTGTTAGAGGTGCTGGTGTTAACATTCCACAAAACACATTGGCACCTTGTACTGCTACAACAAATAATGGTGGTACTTAA 1194 0.4079 MLSELVNFLKACFRPGTDGHARTASDAGGKQDGLLWYKDLGQHLCGEFSMAVVQANNLLEDQSQVESGSLSLTESGPCGTFVGIYDGHGGPETSRFINNHLFQHLKRYTSEQQSMSVDVIRKAIQATEEGFMSLVSQLWSISPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRVVKATGEVLAMQLSTEHNASIESVRQELHSMHPDDSNIVVLKHNVWRVKGIIQISRCIGDVYLKKAEFNREPLYAKFRLNEPFKRPILSSEPSILVHPLQPHDQFIIFASDGLWEHFSNQEAVDIVQKNPRAGIARRMVKTALKAAAKKREMRYSDLNKIDRGVRRHFHDDITVIVVYLDSNLVSRASTVKFPSISVRGAGVNIPQNTLAPCTATTNNGGT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04985 397 Pfam Protein phosphatase 2C 80 324 IPR001932 -
Tsu01g04985 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Tsu01g04985 397 PANTHER ALPHABET, ISOFORM E-RELATED 5 386 - -
Tsu01g04985 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Tsu01g04985 397 SMART PP2C_4 41 353 IPR001932 -
Tsu01g04985 397 ProSiteProfiles PPM-type phosphatase domain profile. 44 355 IPR001932 -
Tsu01g04985 397 CDD PP2Cc 48 355 IPR001932 -
Tsu01g04985 397 Gene3D - 37 365 IPR036457 -
Tsu01g04985 397 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04985 Tsu-Chr1 56668295 56670603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04985 1 392 PP2C-type Phosphatase Gene Family AT4G38520 73.214 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04985 - K01102 gmx:100790374 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04985 01 56668295 56670603 Tsu01g04985 01 56668295 56670603 ECH