Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04978 ATGAACAATTTCATCATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGCTGGGATTACATTGTCTATTGGAAATTAAGTGATGATCAAAGGTTTCTTGAATGGTTAGGATGTTGTTGTAGTGGAAGTGAAAGCAATCAAAATGTTGGAGAAGAACATCTTTTCCCTATGTCTTCTTCATGTAGGGATACAATGTTTTCACATCCAAGAACAAAGTCCTGTGACCTTCTTTCACAACTTTCCACTTCCATCCCTACAGATTCAggGATTCATGCACAAACTTTATTAACAAACCAACCCAATTGGTTGAACTATCCTAATACCTTGGATCCAAACACTTTACAAGAAACAATTAATGGGACCCATGTTTTGATTCCAGTACCTGGTGGACTAGTTGAGCTCTTTGTAACTAAACAAGTTGGTGAAGATCAACAGGTAATAGATTTGATCACATCTCAATGCATTGCAATGGTGGATCAAGAAGGGATGAACCATTCATTTGGCTTCAATTCAAATCAAGTTCTTGGTGGTGAAAATGAtggaaataaaacaaacaataattTCCATTCATCAGAGACATTAAATCTTCCACATGACATTTCTGTAATGAACTTCATGCAACAGTTTAATTACAGTTACAATCAGCAacaaaacagaataaaaaaCGACGAAACCTTCTCCGAAGAATACCATGGTTCATTCCTTCATGATCTTGAAAACAATAACATTCTCAAATCAAACACAGAAGAGGAAAATGATAACAAAAGCTTGATGACAGATAATAATCAGTATATGTTTGTTGATCCATTAgattcaaaaaagaaacaagaaaatgGTGTTGGTAGATCAGATTCTATGTCAGATTGTAGTGATcagaatgaagaagaagatgatggaaAATATAGGAGGAGGAGTGGAAAAGGAAACCAATCAAAGAACCTTGTtgcagaaagaaaaagaaggaagaaacTGAATGATAGATTATATAATCTTCGTTCTTTGGTTCCGAGAATCTCGAAGCTTGATAGAGCTTCAATTCTTGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAACAAGTGAAGGAACTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGCATTGTTAATGTTGCCGGTGTTCAAGTTCAACCagagaataataataatgttggaAAAGCAGAACATGGTTTTCATGTTGGAAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGCCACAAGTGGAAGTAGCTCAGATAGATGGAAATGAGTACTTTGTGAAGGTGTTCAGTGAGCATAGGCCTGGTGGTTTTGTGAAATTGATGGAAGCTTTTAACACTCTAGGCATGGATGTAGTACATGCCACAGTTACTAGCCACAAGGGTCTTGTCTCAAATGTTTTCAAAGTGGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGATGTTAGAGATTCACTACTAGAGCTCACAAGGAACAGTTCTACATGTTGGAGTCATGAGATGGCAACATCAACATCAGAGAATGGTGTGATCAGTAGGGACCAACATGATCACCAGATTAATAATGCTGCTGCCTATCATCCACATCAATTTCATAATTAA 1674 0.3447 MNNFIMQNFTERLRPLVGLNGWDYIVYWKLSDDQRFLEWLGCCCSGSESNQNVGEEHLFPMSSSCRDTMFSHPRTKSCDLLSQLSTSIPTDSGIHAQTLLTNQPNWLNYPNTLDPNTLQETINGTHVLIPVPGGLVELFVTKQVGEDQQVIDLITSQCIAMVDQEGMNHSFGFNSNQVLGGENDGNKTNNNFHSSETLNLPHDISVMNFMQQFNYSYNQQQNRIKNDETFSEEYHGSFLHDLENNNILKSNTEEENDNKSLMTDNNQYMFVDPLDSKKKQENGVGRSDSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNVAGVQVQPENNNNVGKAEHGFHVGNGYVSKQKQEDVGTVTDKQTQQMEPQVEVAQIDGNEYFVKVFSEHRPGGFVKLMEAFNTLGMDVVHATVTSHKGLVSNVFKVEKKESEIVEAEDVRDSLLELTRNSSTCWSHEMATSTSENGVISRDQHDHQINNAAAYHPHQFHN 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04978 557 Pfam Helix-loop-helix DNA-binding domain 319 362 IPR011598 GO:0046983
Tsu01g04978 557 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Tsu01g04978 557 Coils Coil 493 513 - -
Tsu01g04978 557 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 92 523 - -
Tsu01g04978 557 CDD bHLH_AtAMS_like 315 385 - -
Tsu01g04978 557 MobiDBLite consensus disorder prediction 275 323 - -
Tsu01g04978 557 CDD ACT_UUR-ACR-like 450 513 - -
Tsu01g04978 557 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 156 IPR025610 -
Tsu01g04978 557 Coils Coil 351 378 - -
Tsu01g04978 557 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 376 IPR036638 GO:0046983
Tsu01g04978 557 SMART finulus 318 367 IPR011598 GO:0046983
Tsu01g04978 557 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 92 523 - -
Tsu01g04978 557 Gene3D - 301 377 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04978 Tsu-Chr1 56600263 56603000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04978 6 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 48.457 1.08e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g04978 bHLH-MYC_N 1.8e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04978 - - aprc:113871920 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04978 01 56600263 56603000 Tsu01g04978 01 56600263 56603000 ECH