Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04971 ATGATGAGTAGTAGTTGTGGAAGAGAaggtggaggaggaggagtGAGACAATACATAAGATCAAAAGTTCCTCGTTTAAGATGGACTCCTGAACTTCATCGTTGCTTTGTTAATGCCATTCAAACTCTTGGTGGTCATCATAAGGCTACCCCTAAACTTGTTCTTCAGTTAATGGATGTCAAAGGACTCACTATTTCACATGTCAAGAGTCATCTTCAgATGTACAGAAGCATGAGAGGTGAATTAGGAAAACAAgGTAGGACAAGTTACCAAAATAGGAACCAAGGTTttgaagaacatgatgatggATGTGTTGATGAAGTAAATGATGCTAGTGTTGAGCATTCTTTGAGAAGAGAATCAGATTCTTCTAATTTCTCAAAAAGAGCTAGAATAGAGAGGGGAAGTTGTTCTACAACAACTAATATGCAATGCAGCCAAAGAAGAATATGTGATGATGTAGTAAAAAATCCTCCGTACTGCTTTTATGACTATGTACTACAACAGCCTAATAATACCAATACCAATACCAATACCATGGGTAGTGAgcatgatgataatgatgatgagcaTAAGAATAAAGATGAACAAGAGTTTTGTGGATGGCAGAGGAGGCAGATACAACCACCTAATTCTTCAGATTTTGGCATaaacctcacttctttcaaatCTCTAAACCAACAATCTGATTTCCCTCAGGATAATAATGTAAATGACAGAAATACCCCTTCATGGGCAATTAATGGACTTACCAAAACTGACAGGGCACATGTAGAAGTTGAAGGTGAAGGAGGACATGAGTTGTCATTGTCTCTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGTTTCTTATTCGGCCAGTGAAATCAGTGAGGCAATTTCATGCTGtcctcttcttcctcctcctaACCCTGCTGGTGGGTTTAGCAGCAGCAGCTACTACAAGGACTGCTCTAGAACATCATCATCTTCTACTGTCAAAGAAAGGATTAACTTAGACCTATCTTTAGCCATTTGTGGCAATTGA 1032 0.3459 MMSSSCGREGGGGGVRQYIRSKVPRLRWTPELHRCFVNAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGELGKQGRTSYQNRNQGFEEHDDGCVDEVNDASVEHSLRRESDSSNFSKRARIERGSCSTTTNMQCSQRRICDDVVKNPPYCFYDYVLQQPNNTNTNTNTMGSEHDDNDDEHKNKDEQEFCGWQRRQIQPPNSSDFGINLTSFKSLNQQSDFPQDNNVNDRNTPSWAINGLTKTDRAHVEVEGEGGHELSLSLTLQNPSPQTSNVSYSASEISEAISCCPLLPPPNPAGGFSSSSYYKDCSRTSSSSTVKERINLDLSLAICGN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04971 343 Gene3D - 23 79 - -
Tsu01g04971 343 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 2 343 - -
Tsu01g04971 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 343 IPR044848 GO:0003700
Tsu01g04971 343 SUPERFAMILY Homeodomain-like 22 77 IPR009057 -
Tsu01g04971 343 Pfam Myb-like DNA-binding domain 26 76 IPR001005 -
Tsu01g04971 343 MobiDBLite consensus disorder prediction 173 195 - -
Tsu01g04971 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 80 IPR017930 -
Tsu01g04971 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 24 77 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04971 Tsu-Chr1 56546032 56549843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04971 6 82 G2-like Transcription Factor Family AT1G14600 73.418 9.68e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g04971 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04971 - - mtr:MTR_1g112370 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04971 01 56546032 56549843 Tsu01g04971 01 56546032 56549843 ECH