Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04964 ATGGCTGCATCATCTTCCTCAGCATCATTGTTTGGTTTCAGAGACGAAGATCCGAATCCGATGAAGCAACAACATTCCTTGCCACCATCTTTATCTGCAACTCCAGCTGCTGCTGCACCATCccagaagaaaaagagaaaccAACCTGGAACACCAAAACCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACATAATTTGCCTTGGAAGCTTAAGCAGAAGAGTACAAAAGAGCCTAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGAGCACTTGGTGACCTCACTGGCATTAAGAAACATTTCTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAACTTGTGGCACTAGGGAATACAAATGTGACTGTGGCACTCTCTTCTCCAGGAGGGACAGTTTCATCACTCACAGAGCTTTCTGTGATGCATTGGCTCAAGAGGGTCCTAGACAGCCACCAATTACCCTACCTGGTGCCATTGGCTCTCACCTCTATGGAAGCACAAGCAACTCAGCTACCGATATTCTGCGCCTCGGCGCCTCTGCTAATCGAACCGGACAATTCGACCACCACAATATGCTTCCAACAACTTTCAGACCTAATAACTCTTTcttcaacagcaacaacattCATGATCCAAATCAAAACTATGTCCCTGACCAAGGTTTAATGATGCAGcagaataataacaacaacaataacaatctCTTCAACATACCGAATTTCCTTTCTAGTAATAACAGTGCTACTACAAACACTAACAGTAGCAACAACTCATTCTCTGAGCATTTGAATGTTAACAATGAAGGAACACACTTCTTCACTGGGACAAGTAGTGCTCCATCATCACTCTTTAGCACTTTCCCTCAAGGAGGTGGAAATAGTAACATTAATGCTGCTGCTGCTACTTCTATAGCTTCAATGTCAGCAACTGCACTTCTTCAAAAAGCTGCTCAAATGGGTGCAACTTCAAGCAATGGAAATGGAACTACCGCAACTTCGCTTCTGAAAAGCTTCGGAAACAATACCGGTAGTAATTCAGCTTCttctggtggtggtggtgctgaACATAACAGACAAATAATGAGTGGTGGTGGAAGTGGGAACTATGGTTTTGGTGGTGGGAATGAGCAGAGTAATTTGCATGATTTGATGAACTCTTTTGCTGCTACTGGGAATAGCTCGTTATTTGAAACTGGAGGAGGGGGTGTAGGGCTTGGAAGTGGAGGTGGAGATAGTAGGCAGATGACTCGTGACTTTTTAGGAGTTGGTCAGATTGTGAGAAGCATGAGTGGTGCTGTTGGAGGACAAAGAGAACATGCTGCTGCTTTTAACTTGCCAGGTTCTTTGGAAGGAGATCAAAGAAACAACATCAATGCTGCAGCATCATTTGGAAGAGGAAGTGGTGGTGTTGGTGGTGGAGCAGGAGGAAATTTTCAGTGA 1608 0.4185 MAASSSSASLFGFRDEDPNPMKQQHSLPPSLSATPAAAAPSQKKKRNQPGTPKPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPITLPGAIGSHLYGSTSNSATDILRLGASANRTGQFDHHNMLPTTFRPNNSFFNSNNIHDPNQNYVPDQGLMMQQNNNNNNNNLFNIPNFLSSNNSATTNTNSSNNSFSEHLNVNNEGTHFFTGTSSAPSSLFSTFPQGGGNSNINAAAATSIASMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTGSNSASSGGGGAEHNRQIMSGGGSGNYGFGGGNEQSNLHDLMNSFAATGNSSLFETGGGGVGLGSGGGDSRQMTRDFLGVGQIVRSMSGAVGGQREHAAAFNLPGSLEGDQRNNINAAASFGRGSGGVGGGAGGNFQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04964 535 MobiDBLite consensus disorder prediction 1 56 - -
Tsu01g04964 535 MobiDBLite consensus disorder prediction 398 429 - -
Tsu01g04964 535 Gene3D Classic Zinc Finger 51 120 - -
Tsu01g04964 535 MobiDBLite consensus disorder prediction 23 37 - -
Tsu01g04964 535 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 488 - -
Tsu01g04964 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Tsu01g04964 535 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 488 - -
Tsu01g04964 535 SMART c2h2final6 72 94 IPR013087 -
Tsu01g04964 535 SMART c2h2final6 148 168 IPR013087 -
Tsu01g04964 535 SMART c2h2final6 113 143 IPR013087 -
Tsu01g04964 535 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Tsu01g04964 535 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Tsu01g04964 535 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Tsu01g04964 535 Gene3D Classic Zinc Finger 126 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04964 Tsu-Chr1 56480075 56488584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04964 42 207 IDZ Gene Family AT2G02070 92.169 1.78e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g04964 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04964 K25870 - gmx:100799389 535.798