Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04946 ATGGATACTTCAAATCCTGCTGCATTTGTCAATGCCCAGTCTCTTCCCAATTTCATTGGAAAGAAAGTAAGAACAGTGGTTCAGGTGAATCATTCTGACGGTGCAATAATCACAGGAAAATCCACCGATAACTCTCAGATAACTGTAAAAGGGTTATCATCACAAGTCCCAGTCATGAATTATGTAGAAGTTATTGGCATTGCTGAAAGTAACGACTCTATCCGCGCTGAAATGTTTACAGACTTTGGTGCCACATTTGATGTCAACTCTTACAATCAGTTATGCCAACTAGCAAATGGTCAATTCAAAAGTCGGGTTGAGCTTCCGAGTTATCCTGATGACTTGGTGGTGAGTGATGCTGATAAGGATCCTTCGAATCAAATACCTTGTGATTCGAAGACTAAACATAGCGATAACAAGAGGAAGAAGACAGGAATACCATGGACCGAAGAAGAACATAGGGTGGATATGCTAGAatgtcagaatcacgAATTTGTGCAGAAGAGAAAGTCAGAAGATAAGACAATATATGGAAGTAAGATGGAAGGAGGTGGTGTTCATGGAGGAGGCGGTCATGGTGGCCAATCACATGGAGGAGGAGCAGTTATACCAGTTTATGCAGTCGGTGCTGCAAATAAAAATCACCAGCCTCAAAGTCATCGTGGTGCTGCAGACTGCAACCtcgacaaaataaaaaattcctcattgcttataataatatttgtctATCCTCTCATGATGCTTTTTTTGTTAACATAG 759 0.386 MDTSNPAAFVNAQSLPNFIGKKVRTVVQVNHSDGAIITGKSTDNSQITVKGLSSQVPVMNYVEVIGIAESNDSIRAEMFTDFGATFDVNSYNQLCQLANGQFKSRVELPSYPDDLVVSDADKDPSNQIPCDSKTKHSDNKRKKTGIPWTEEEHRVDMLECQNHEFVQKRKSEDKTIYGSKMEGGGVHGGGGHGGQSHGGGAVIPVYAVGAANKNHQPQSHRGAADCNLDKIKNSSLLIIIFVYPLMMLFLLT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04946 252 MobiDBLite consensus disorder prediction 116 143 - -
Tsu01g04946 252 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 1 104 - -
Tsu01g04946 252 CDD RPA3 6 99 - -
Tsu01g04946 252 Pfam Replication factor A protein 3 1 101 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu01g04946 252 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 104 - -
Tsu01g04946 252 MobiDBLite consensus disorder prediction 115 143 - -
Tsu01g04946 252 SUPERFAMILY Nucleic acid-binding proteins 5 99 IPR012340 -
Tsu01g04946 252 Gene3D - 2 105 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04946 Tsu-Chr1 56363992 56371264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04946 1 103 Core DNA Replication Machinery Family AT3G52630 59.223 3.18e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04946 K10740 - gmx:100781484 157.532