Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04930 ATGCTTCTTCCTATGAGCTGCATTCTTTTAATGTGTCTATTCACTTCATTCATGTTCACACCCCAAATCAAAGCCTCAAAAGCTAACACATCAAATCTCACTTTACCACACCAACATCCTTACCCTGAAGCTGTTGTTCACGAACTTCAACAGAAAATCAATGTATCATTTTCTAGAAGAGAACTACTGGGAAAAGACCAAGGTTCTTGTTTAACAGGAAACCCAGTCGATGATTGTTGGAGATGCGACACAAACTGGGCACAAAATCGTCAAAAGCTAGCAGAATGTGGAATCGGATTCGGACGCGCTGCCATGGGAGGTAAAAACGGTCAGATCTATATCGTAACAGATTCCTCCGATAAAGACCCAGCAAATCCAATTCCAGGAACACTCCGTCACGCTGTAATTCAAGATGAACCACTCTGGATAATCTTCTCAACCGACATGACAATAAATCTCCGTCATGAACTAATCTTCAACTCATTCAAAACCGTCGATGGCCGCGGCGCAAATGTTCAAATCACCGGTCACGGTTGCATAACTCTCCAATACATCTCAAATATTATCATCCATAATATCCATGTGCATCACTGTAAACCATCTGGTAACACTAATATACGCGCTAGCCCAACACATGTTGGATTCAGAGGAATCTCAGACGGTGATGGTATATCAATATTCGGTTCTCGGAACATTTGGATCGATCATTGCTCGCTATCTTATTGTACTGATGGTTTAATTGATGCTATAATGGGTTCAACTGCGATAACAATTTCAAATAATCATTTTGCACATCATGATGAAGTTATGTTATTAGGTCATAATGATAAGTATAGTCCAGATAGAGGAATGCAAGTTACGATTGCTTTTAATCACTTTGGGCAAGGACTTATTCAAAGAATGCCAAGGTGTAGATTAGGTTATATTCATGTTGTGAATAATGATTTTACTCAATGGGAAATGTATGCTATTGGAGGTAGTGCTAATCCTACTATTAACAGTCAAGGTAACCGTTACACCGCTCCTTCCGATCCAAATGCTAAAGAgGTGACCAAGCGTGTGGAGACAGATGATAAAGAATGGAGTGGTTGGAATTGGAGGACGGATGGGGATATAATGGTAAATGGGGCATTCTTTGTACCGTCGGGGGCGGGGATGAGTGCTCAGTATGCGGAGGCGTCCAGTGTGCAACCGAAGTCAGTCGTGCAAATTGATCAACTCACCATGTACTCCGGTGTATTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGTTTCAACGGTGGTGGGACCACAACTGGAGCCTCTAGTAAGGGTTACAATGGAAATGGGGGGTCCAGTAGTAGTGACGATGGAGACTTCTTTGGGATGATATTCAAAGGTAGTACAAGCCAAGGAGCACCGCTACAACCCTACTCATCAATATTAtttctttcaacttttttgtctcttttaattatttttattttggacacTTACCACCAACTATga 1494 0.4076 MLLPMSCILLMCLFTSFMFTPQIKASKANTSNLTLPHQHPYPEAVVHELQQKINVSFSRRELLGKDQGSCLTGNPVDDCWRCDTNWAQNRQKLAECGIGFGRAAMGGKNGQIYIVTDSSDKDPANPIPGTLRHAVIQDEPLWIIFSTDMTINLRHELIFNSFKTVDGRGANVQITGHGCITLQYISNIIIHNIHVHHCKPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGQGLIQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVETDDKEWSGWNWRTDGDIMVNGAFFVPSGAGMSAQYAEASSVQPKSVVQIDQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGASSKGYNGNGGSSSSDDGDFFGMIFKGSTSQGAPLQPYSSILFLSTFLSLLIIFILDTYHQL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04930 497 Pfam Pectate lyase 156 337 IPR002022 -
Tsu01g04930 497 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Tsu01g04930 497 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Tsu01g04930 497 PRINTS Pollen allergen Amb family signature 393 416 IPR018082 -
Tsu01g04930 497 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Tsu01g04930 497 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Tsu01g04930 497 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Tsu01g04930 497 PRINTS Pollen allergen Amb family signature 364 388 IPR018082 -
Tsu01g04930 497 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Tsu01g04930 497 Gene3D - 73 415 IPR012334 -
Tsu01g04930 497 SMART amb_all 148 345 IPR002022 -
Tsu01g04930 497 PANTHER PECTATE LYASE 6 435 - -
Tsu01g04930 497 PANTHER PECTATE LYASE 18-RELATED 6 435 IPR045032 GO:0030570
Tsu01g04930 497 SUPERFAMILY Pectin lyase-like 68 390 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04930 Tsu-Chr1 56219827 56226327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04930 1 493 Polysaccharide Lyase AT3G53190 61.771 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04930 K01728 - gmx:100808438 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04930 01 56219827 56226327 Tsu01g04930 01 56219827 56226327 ECH
Tsu01g04930 01 56219827 56226327 Tsu04g02544 04 28668685 28670236 ECH
Tsu01g04930 01 56219827 56226327 Tsu03g02555 03 30949279 30952010 ECH