Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04920 ATGGCTGGAAAAGAAGAGAATCGAATATTTGTTGGTGGATTGGGTTGGGACGTTACGGAACGTCAGCTTGAACATGCCTTTGATCGGTACGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGGGATACAGGACGTCCGCGTGGATTTGGGTTTATTACATTTGCAGATCGTCGGGGAATGGAGGATGCAATCAAAGAAATGGATGGACGTGAAATTGGTGATCGCATCATCTCAGTCAACAAGGCACAGCCCAGGATGGGGGGTGATGATGCAGACCAACGTTACAGAGGTGGCTTCTCTTCAGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGCCGTCCGGGGCACTGGGCCAGAGATTGTCCTTTGGCAGGAGGTGATGGTGGTCGTGGTAGGGGTGGCGGTTCATTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGACACGGGGATCGCCTTGGTGAGCGTGAACGATACATTGATGATCGTTATGACGGAGGACGTTATGGGGATAGGGACCGTTTAGACACCCGAGACTACAAATACAGTGGTCGTGATCGCTATGCTAGTGACAGGTATGCAACAAGCGGAGATCGTTTTGCAAGTGATCGATATGGCAGTGGCTCAGACTACCCGCAAAATGGTTATGGGAAGGAAAGAGGCTATGACCGGTACGGTGGTGCTCGTGGAGGTGCTGATAGAAATGGAAGTGGAATGCCAGCTCGCGATGAAGGAAGAAGTTATAGGGGTAGGGCTGGTCCTTATGACCGCCCTAGCAGGGCTGCTCGTCCATCATCATTTGACCGCTACTGA 846 0.5142 MAGKEENRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMDGREIGDRIISVNKAQPRMGGDDADQRYRGGFSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGGGSFSSRPRFGGAGGHGDRLGERERYIDDRYDGGRYGDRDRLDTRDYKYSGRDRYASDRYATSGDRFASDRYGSGSDYPQNGYGKERGYDRYGGARGGADRNGSGMPARDEGRSYRGRAGPYDRPSRAARPSSFDRY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04920 281 MobiDBLite consensus disorder prediction 84 110 - -
Tsu01g04920 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Tsu01g04920 281 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Tsu01g04920 281 MobiDBLite consensus disorder prediction 136 187 - -
Tsu01g04920 281 MobiDBLite consensus disorder prediction 209 281 - -
Tsu01g04920 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Tsu01g04920 281 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Tsu01g04920 281 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Tsu01g04920 281 SMART rrm1_1 8 81 IPR000504 GO:0003723
Tsu01g04920 281 Gene3D - 115 143 - -
Tsu01g04920 281 MobiDBLite consensus disorder prediction 160 187 - -
Tsu01g04920 281 SUPERFAMILY Retrovirus zinc finger-like domains 103 137 IPR036875 GO:0003676|GO:0008270
Tsu01g04920 281 Gene3D - 1 114 IPR012677 -
Tsu01g04920 281 PANTHER TRANSFORMER-2-RELATED 1 244 - -
Tsu01g04920 281 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 244 - -
Tsu01g04920 281 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04920 Tsu-Chr1 56165998 56170805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04920 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 4.31e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04920 - - gmx:100776333 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04920 01 56165998 56170805 Tsu01g04920 01 56165998 56170805 ECH