Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04910 atgggTCTCCTTCAAATCACTAAAAAATCAatctttttcactttttttgcTATACTCATTCCAATAATTACTACAAAACTCTTTTCTTCATATTCATCATCTCTATCAACCTTAATTGCTAGTGTCTCTCTCATAATCTTATTATTATACATATACTTAACTCATTCTAAGCAAAATTCTTCACCTCCAAGCCCTTTTTCTGTTCCTATATTTGGAAATTGGCTTCAAGTTGGCAATGATCTTAATCATCGTATTCTTGCAACCATGTCACAAACTTATGGATCACTCTTCCTACTTAAACTTGGTTCCAAAAACTTGGTTGTTGTCTCTGATCCAAATCTTGCAACACAAGTTCTTCATTCACAAGGTGTTGAATTCGGTTCTCGTCCTCGTAATGTTGTCTTTGATATCTTCACTGGTAATGGACAAGACATGGTTTTCACTGTCTATGGTGATCATTGGCGTAAAATGCGAAGAATCATGACATTACCATTTTTCACTAACAAAGTTGTGAATAATTATAGTAACATGTGGGAACAAGAAATGGATTTGGTTGTCAAAGATCTTAAGGCTAATGAAATTGTTAGAACTGAAGGGACTGTCATCAGAAAACGTCTTCAATTGATGTTGTATAATATCATGTATAGAATGATGTTTGATTCCAAATTTGAGTCTCAAGAAGATCCTTTGTTCATTCAAGCTACAAGGTTTAACTCTGAGAGAAGCCGTTTGGCACAGAGTTTTGAGTACAATTATGGTGATTTTATACCTTTGCTTAGGCCATTTTTGAGAGGGTACCTTAACAAGTGCAAAGACTTGCAAACTAGGAGGCTTGCATTTTTCAACAACTACTTCATTGAGAAGAGGAGAAAAATAATGGCAGATAATGGGGATAAGCATGAGATAATATGTGCAATTGATCACATAATAGATGCTGAGATGAAAGGAGAAATAAGTGAAGATAATGTGACTTACATAGTAGAAAACATAAACGTTGCTGCAATAGAGACAACACTATGGTCAATGGAATGGGCAATAGCAGAGTTAGTTAATCATCCAAAAGTTCAAACTAAAATACGCGACGAGATATCAGAAGTACTTAAAGGCGAACAAGTTACCGAATCAAATCTAAACCAATTACCATATTTACAAGCCACATTGAAAGAAACATTAAGGTTGCATACACCAATACCACTATTAGTGCCTCACATGAACCTTGAAGAAGCTAAGTTAGGAGAGTACACTATTCCTAAAGAGTCTAAGGTAGTTGTGAATGCATGGTGGCTTGCAAATAATCCATTATGGTGGGAAAAACCAGAAGAGTTTAGGCCAGAGAGATTTTTGGAAGAGGAAAATGGAATTGATGCTGTTGCTGGTGGAGGGAAAGTTGATTTTAGATTTGTGCCATTTGGTGTTGGAAGAAGAAGTTGTCCTGGAATTATACTTGCATTGCCAATATTGGGATTGGTTATTGCAAAGTTAGTGTCAAATTTTGAGATGAATTGTCCAAATGGGACTAAGATTGATGTTAGTGAAAAAGGTGGACAATTTAGTTTGCATATTGCTAACCATTCCACtgttttgttccaacaaattcATTAG 1602 0.3446 MGLLQITKKSIFFTFFAILIPIITTKLFSSYSSSLSTLIASVSLIILLLYIYLTHSKQNSSPPSPFSVPIFGNWLQVGNDLNHRILATMSQTYGSLFLLKLGSKNLVVVSDPNLATQVLHSQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVNNYSNMWEQEMDLVVKDLKANEIVRTEGTVIRKRLQLMLYNIMYRMMFDSKFESQEDPLFIQATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQTRRLAFFNNYFIEKRRKIMADNGDKHEIICAIDHIIDAEMKGEISEDNVTYIVENINVAAIETTLWSMEWAIAELVNHPKVQTKIRDEISEVLKGEQVTESNLNQLPYLQATLKETLRLHTPIPLLVPHMNLEEAKLGEYTIPKESKVVVNAWWLANNPLWWEKPEEFRPERFLEEENGIDAVAGGGKVDFRFVPFGVGRRSCPGIILALPILGLVIAKLVSNFEMNCPNGTKIDVSEKGGQFSLHIANHSTVLFQQIH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04910 533 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 7 532 - -
Tsu01g04910 533 Gene3D Cytochrome P450 51 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PANTHER OS02G0467000 PROTEIN 7 532 - -
Tsu01g04910 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Tsu01g04910 533 Pfam Cytochrome P450 62 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 384 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 425 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 PRINTS E-class P450 group I signature 114 135 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04910 533 SUPERFAMILY Cytochrome P450 62 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04910 Tsu-Chr1 56099379 56101429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04910 36 530 Monolignol Biosynthesis Gene Families AT2G30490 63.655 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04910 K00487 - gmx:100812188 819.69