Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04908 ATGCCCTCCGATGCACACGATTCTCGTCGCAAGCATCGCCGATCATCCTCTCCCGAtgaccacgacaaatcctccaAACGTCACAAGCACCGTCACCATCATCACCGCCACCGTCACGGAAACAAAAAACGCGACGAGGAGATTCAATTCGATGATGAAACTGTAGCCACGGTTCCTTCTCCTAGTCCTCCGCCTATTCCCGCTCTGCGTAACGATCTCAATGAGGACGATGTTGAGGAGGGAGAGATTCTTGATGATGAGGTTGAAGCTGGTGAAATTGAGGTGAAAGAAGATCGAGATCTTCGATCTGATAAGAAAATTCCGGGACTTCCCGCTAAAAGTTCGAAAACTGAAAGGGAGGACTTTAACAATGGTAAGGTTATTAGTCCTACTTCTGACGCAGAAGATGGGAAATGGCGTCAGAGCTACGTTGATTCTCGAATTCGTGAAGATGATGATTCTCCAAACCACTCAAGAGCTGAAAATCAAGCTGGCACTGATGCTTTGGACAATGGGTTTTTGGATGTAAAGTCTTCCAAAAGGGATAAGAGACAGAATGGGGTAGTTGAACATTTTAAAGGAACTGAGAAACTAAAAGGTGACTATGACGATGAAGCACTGGAGGCTAGAAGGGAGGTGAATTCCCACAGGAATTCTTCTGAAAGTGTGGAAGAAAAACATAGAACGTCAGGGAATTCTCCTTTGAATGATGGATACCGAAGTCGATCAAGATCAATCGGTCGTACAAGGGACAGGTCTCGTTCTCGTAGTGTAGTAGAAGAGTATGCTCATCGCAAGAGCAGGCATTCTAGGGAACACGGATCCCTTTATTATACCAGCAGACATACGACTGACTATGACCTTGATGAGGAAAGAGCCAGGGAATACAGAAGGGAGAATCGTCGTGGTAGTAAGGATCTGGTGGAAGATGATAGGCGGGAACACAGTACCAGGTACCACAGTTGGGAGGCCCGAGATAAGACTAGGGATAAGGATAGAAGTAGAGATAAAGATGTGGAGAGAGACTTGCACAGGGAAAAGAAGCGGGAGGAAACTAGCAGGAATAAGGAGGTTGATTGGGATGTGGAGATTCATGCGGACATTTCTAAAGCAGTTGATGGTAAGagtgatgatgttgatgatgtggAACCATCATTTTCTGTTGGGAAATCTCCACCGGAAAATGTGGACGTTGGCTCAGAGAAGGTACCCGGTGCTGGGGGCCTAGGCGAGGGTACGCCAAAGAGCGAGAGGTCAGCTGACAAGTATTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCGGGTAAAGGAGATGGATTACTGATTGAGAGGGCTGGCCTGCATGACAATTGGGATGATGCAGAGGGATATTACAGCTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTTACTGCTGCACACGGAAAAGGTGTCTTTTCAACAGTTGTACGAGCTAAGAATCTAAAAGCTGGTAATGGCGAGCCAGATGAAGtagcaataaaaataattcgTAATAATGACACCATGTACAAGGCTGGTTTGGATGAATTGGTTGTTTTGAAGAAATTAGTAGGTGCAGATCCGGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGCTTTAAGTACAGAAATCATCTATGTTTAGTTTTTGAATCTCTAAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGGCTTAGGCTAACAGCTGTGAGGGCATATGCAAAACAGCTTTTTATTGCACTGAAGCATCTCCGTAACTGTGGTGTTTTGCACTGTGATATAAAGCCTGATAATATGTTGGTCAATGAGGCTAAAAATGTTCTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTAACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAAATAATTCTTGGCTTGCAGTATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAATTATATACAGGGAAGGTTCTTTTTCCAGGGCTCACAAACAATGACATGCTCCGACTTCACATGGAATTGAAGGGCCCTTTTCCAAAAAAGATGCTCCGTAAGGGAGCATTTACTGAACAACATTATGATCATGATCTAAGTTTTTATGCTACTGAGGAGGATCCTGTAACAAAAAAGACCATTAAGCGGATGATGCTTAACATAAAGGCGAAAGATATTGGAACAATCATCACTGGCTCCGGGGAGGATCCAAAAATGGTGGCCAATTTCAAAGATCTTCTGGATAAAATTTTCGTCTTGGATCCGGAAAAGAGGCTGACAGTCTCACAAGCATTGAACCACCCATTCATCACTGGTTCTAATCATGTGGCACTATTTATCTTCTCTGTACGGCCCAAGGAGTGTCATCGCAGTTGTCTGCCTGTTGAAGTGAAAAAGTGTGATGTCCCTAAAGGCGTACACTTAACTGGCGGTTCTCAGTGGAGTGTACTGTTTCTATTGAGACATCACGGGAACCCAGGAGAAGGCACTTCTACTGGATGTTTGGCTGTGTTCTTGAAGCATATTCTTCTTATCTTGGTGATGTATCATGCTCCTGCAATTTTAGGGAGACCTACAACTGTGATTACCTTGGAACTAAATTGGTGA 2661 0.4288 MPSDAHDSRRKHRRSSSPDDHDKSSKRHKHRHHHHRHRHGNKKRDEEIQFDDETVATVPSPSPPPIPALRNDLNEDDVEEGEILDDEVEAGEIEVKEDRDLRSDKKIPGLPAKSSKTEREDFNNGKVISPTSDAEDGKWRQSYVDSRIREDDDSPNHSRAENQAGTDALDNGFLDVKSSKRDKRQNGVVEHFKGTEKLKGDYDDEALEARREVNSHRNSSESVEEKHRTSGNSPLNDGYRSRSRSIGRTRDRSRSRSVVEEYAHRKSRHSREHGSLYYTSRHTTDYDLDEERAREYRRENRRGSKDLVEDDRREHSTRYHSWEARDKTRDKDRSRDKDVERDLHREKKREETSRNKEVDWDVEIHADISKAVDGKSDDVDDVEPSFSVGKSPPENVDVGSEKVPGAGGLGEGTPKSERSADKYCDDIFGETPTGVRKSGKGDGLLIERAGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGKGVFSTVVRAKNLKAGNGEPDEVAIKIIRNNDTMYKAGLDELVVLKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHYDHDLSFYATEEDPVTKKTIKRMMLNIKAKDIGTIITGSGEDPKMVANFKDLLDKIFVLDPEKRLTVSQALNHPFITGSNHVALFIFSVRPKECHRSCLPVEVKKCDVPKGVHLTGGSQWSVLFLLRHHGNPGEGTSTGCLAVFLKHILLILVMYHAPAILGRPTTVITLELNW 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04908 886 Gene3D Transferase(Phosphotransferase) domain 1 534 789 - -
Tsu01g04908 886 PANTHER DUAL SPECIFICITY PROTEIN KINASE 149 789 - -
Tsu01g04908 886 MobiDBLite consensus disorder prediction 75 93 - -
Tsu01g04908 886 CDD STKc_PRP4 473 788 IPR044092 GO:0004674|GO:0006468|GO:0045292
Tsu01g04908 886 MobiDBLite consensus disorder prediction 1 356 - -
Tsu01g04908 886 MobiDBLite consensus disorder prediction 243 356 - -
Tsu01g04908 886 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 149 789 - -
Tsu01g04908 886 MobiDBLite consensus disorder prediction 94 123 - -
Tsu01g04908 886 ProSiteProfiles Protein kinase domain profile. 474 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04908 886 MobiDBLite consensus disorder prediction 138 158 - -
Tsu01g04908 886 MobiDBLite consensus disorder prediction 174 231 - -
Tsu01g04908 886 Pfam Protein kinase domain 476 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04908 886 MobiDBLite consensus disorder prediction 25 41 - -
Tsu01g04908 886 Coils Coil 206 226 - -
Tsu01g04908 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Tsu01g04908 886 SMART serkin_6 474 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04908 886 MobiDBLite consensus disorder prediction 371 420 - -
Tsu01g04908 886 MobiDBLite consensus disorder prediction 1 24 - -
Tsu01g04908 886 Gene3D Phosphorylase Kinase; domain 1 444 533 - -
Tsu01g04908 886 SUPERFAMILY Protein kinase-like (PK-like) 461 803 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04908 Tsu-Chr1 56077915 56088871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04908 473 791 Core Cell Cycle Gene Families AT1G66750 30.000 1.13e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Tsu01g04908 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04908 K08827 - gmx:100784523 810.061