Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04888 ATGGGGGAAGGAAgGAGACAAGATGGAAATCCATTAGACCTTAACAATCTGCCTGATGACAACAACTCAACTAGAGATCATCATGCTAAACAACTTCTTCCTAACACCCCCTCCTTACAACCtgTTACAGGTTATAAGGAAAAGGAAAACggcgaagatgatgatgatagaaAAGATGGGAAGGTCTATGAATGTAGATTTTGTTCCCTCAAATTCTGCAAGTCACAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACAGAGACGCTTAACCATGCTCGTCAGCTAGTCTTCCGTAACGATCATAACCAGCTTGCACCACAACCACCTCCCTCCCACCTAGTAGGATGTTGTCCACCACCAATAGCAACAGGAGGCTACATTCAAGCAAATAGCATGGGAGATCCAACAATGCCTCTAAGATTTCCAAGATACTTCTCAGGCTCATCATCTTCAACTCATATTCCTCCTCCTCCACCTCCACCGCCAACACAACCAACTCAACCATATCTCTACACTTCACCTTCACGACCGGTGTCTTTTCCGACACATTTAATTCCTCAACATCCGATGAACGAATACCATGTTGGTCATGTGATGAGTAGCAGCCACCACCAGCAATATGGAGGACTCCAACACATGAACTACGTTGGAGGCGGAGGTGGTGGTGGGGAGTCAAATTATACGTGCATAGGTGCACCGGTCGGACAAGGTTTTGTTCCGGGAAGTGGTGGCTCTGAGAAAGGTcaaaaccatcatcatcatcatcaacaacatcagGATCAAGATGGTGGAAGTTTGAATTGGGGAAGGAGCAGCTATTCAGGAACACATACTCATAATTCATCGATCAATCGGTTTCAAGATGGTTTCTAA 888 0.4336 MGEGRRQDGNPLDLNNLPDDNNSTRDHHAKQLLPNTPSLQPVTGYKEKENGEDDDDRKDGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNQLAPQPPPSHLVGCCPPPIATGGYIQANSMGDPTMPLRFPRYFSGSSSSTHIPPPPPPPPTQPTQPYLYTSPSRPVSFPTHLIPQHPMNEYHVGHVMSSSHHQQYGGLQHMNYVGGGGGGGESNYTCIGAPVGQGFVPGSGGSEKGQNHHHHHQQHQDQDGGSLNWGRSSYSGTHTHNSSINRFQDGF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04888 295 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Tsu01g04888 295 MobiDBLite consensus disorder prediction 266 295 - -
Tsu01g04888 295 MobiDBLite consensus disorder prediction 28 43 - -
Tsu01g04888 295 MobiDBLite consensus disorder prediction 148 175 - -
Tsu01g04888 295 MobiDBLite consensus disorder prediction 1 58 - -
Tsu01g04888 295 Gene3D Classic Zinc Finger 47 112 - -
Tsu01g04888 295 PANTHER ZINC FINGER PROTEIN JAGGED 6 265 IPR031113 GO:0007275
Tsu01g04888 295 SUPERFAMILY beta-beta-alpha zinc fingers 60 91 IPR036236 -
Tsu01g04888 295 MobiDBLite consensus disorder prediction 157 173 - -
Tsu01g04888 295 MobiDBLite consensus disorder prediction 243 295 - -
Tsu01g04888 295 PANTHER ZINC FINGER PROTEIN JAGGED 6 265 IPR045320 GO:0003700
Tsu01g04888 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04888 Tsu-Chr1 55865436 55878981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04888 5 242 C2H2 Transcription Factor Family AT1G13400 42.041 2.58e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04888 - - mtr:MTR_1g110710 365.925