Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04883 ATGGGTGCCACCGGCTCCGGAAAATCACGTCTTTCCGTTGAACTCGCCACCCATTTCCCTTACTTCGAAATAATCAACTCCGATAAAATCCAAGTCTACAAAGGACTTGACATAACCACCAATAAGATCCCCTTTCATCAACGCAACAATGTTCCTCATCATCTTCTCGGCGACGTTGACCCTTCTCACGGCGAGTTTTCACCTTCAGATTTCCGTCGTCACGCCGGAGATATTATCTCAGATATAACTTCAAGGAGAAAGCTTCCCATTATCGTTGGTGGGTCTAACTCATTCATTCATGCTCTTCTTGTAGAACGATTTGACTCAGAGTTGAACGTGTTTGAAAACGagtcatcaacatcatcatcggAGATATCAACGGATTTAAGGTACAAATGTTGCTTTATTTGGATGGATATATCGTTTCCTGTGTTATCGGAATATTTACTCAAACGAGTTGACGATATGTTTGACTCGGGAATGGTGGACGAGTTAGCCGAGTTTTATGAACCGGATGCGGATAACAAAACCGGGTTAAGAAAAGCAATCGGTGTACCCGAGTTCGACCGGTTTTTTAAAGAGTATCCACCGATGGAAAAAGAAGGTAATAATAATTCAATGCGGGAACGTGCATACGAGGAAGCAGTGAAAGCTATTAAAGATAACACGTGTCAGCTAGCTAAACGTCAGATTGGGAAGATCTTACGGTTAAAACGAGCTGGATGGGACCTACAAAGAATTGATGCAACGGAGGCGTTTAGGGCGGTGCTGACGTCAGAGTCTAACGGTGGTAACGGCGGAGGAGAAGGATTTTCCGGCGTATGGAAAAAACAAGTGTTGGAACCAAGCGTGAAGATTGTGAAGAGATTCTTGATGGATTAG 882 0.4274 MGATGSGKSRLSVELATHFPYFEIINSDKIQVYKGLDITTNKIPFHQRNNVPHHLLGDVDPSHGEFSPSDFRRHAGDIISDITSRRKLPIIVGGSNSFIHALLVERFDSELNVFENESSTSSSEISTDLRYKCCFIWMDISFPVLSEYLLKRVDDMFDSGMVDELAEFYEPDADNKTGLRKAIGVPEFDRFFKEYPPMEKEGNNNSMRERAYEEAVKAIKDNTCQLAKRQIGKILRLKRAGWDLQRIDATEAFRAVLTSESNGGNGGGEGFSGVWKKQVLEPSVKIVKRFLMD 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04883 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 174 IPR027417 -
Tsu01g04883 293 Gene3D - 1 291 IPR027417 -
Tsu01g04883 293 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 142 244 - -
Tsu01g04883 293 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 4-RELATED 1 291 - -
Tsu01g04883 293 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 291 IPR039657 -
Tsu01g04883 293 Pfam IPP transferase 113 231 - -
Tsu01g04883 293 Pfam IPP transferase 31 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04883 Tsu-Chr1 55816458 55817339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04883 130 291 C2H2 Transcription Factor Family AT2G27760 32.973 3.95e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04883 K10760 - gmx:100813761 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04883 01 55816458 55817339 Tsu01g04883 01 55816458 55817339 ECH