Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04865 ATGGTTCCACAGCGCCTTTTCTTGTTTTCATGCTTTGTTACACAACTGCTACTAGCATCAGGTAACTGTCCATCTTCAATTAACTGCGGATTTCTCGGAGAAATTGAATTTCCTTTTACAAGCACACAGCATCCAAATTGTGGCATGTTAGTAATACATGGTTGTGATGACTACGAACCACAATccaaaaaaaccattcaaaatAACAAAAGATGGTTTGATGTTCTCAAAATCGAACCCTTCACAATTACAATTCGAGATGACCAACTTCATGACTTGTTGCTACAAAGAAGCTGCAATATTCTAACATACAATTCTATGTTCACGGTCAACACGCCTTTGGTTTCTTCTCGTCTAGAAAATCCAGTAACTGTTTTTGGATGCAACAGTAACAACACACTTGATCTTCAAAAATACTATTCCGTTTCTAATTCTACTTCGATTTGTAGAAACGAAAACGATACTTTGAATGGTGTTTCAGATTCTGATATACAGAATAATAGAGCTATTGTGGTTATAATTGATACTATCTCTTCAAACTCTAATCATCTTAAAGGATGCTCAAATGTTGATCTTCCAACAAGTTCCAAGGTTAACCATCTTGATCCAGATGAACTTTTTAACTTCCTAAGTGGTGATATTGCAATCAAAATACAAGTTTCTCAGAATTGTTCTACCTGTCATGATCTTTATGGAGGTCAATGTCGACTTGATAACACCGGAAACTTCTATTGTCATCAAGGGAAATCTAAAAAGACTCATCTTACAGTGGCAGCAGCTACATCTTCTGCCGGAGTACTCGGAGTTCTGGTTTTTTTGGCTTGGTTTTTGAGAAGACGCTTTATCAACAATAAAAACCCTCCATACCAAATAATAGAGTTGTTTCTGAAAAACCATGGTCACCTTGCTGCTAAAAGATTCACTTATGCAGAGATAAAGAAGGCAACTAATtcattcaaaaacaaattaggCCAAGGAGGATATGGTAGTGTATACAAAGGTACATTACAAGATGGAAGTCTTGTGGCAGTAAAAGTATTAAGCGAATCCAATGGTAATGGTGAAGAATTCATCAACGAGGTTGCTAGTATCAGTGTTACCTCTCATGTTAACATTGTTAGTTTGTTAGGGTTCTATCTTGAAGGTTCTAAAAGAGCTTTGATATATGACTACATGCCTAATGGATCACTTGAGAAGTTCATATATGAAGACAAAGATCCATTAAATCTAAATCTCCAATTGAGTTGCAAAACTATCTACAATATTGCCATTGGCGTTGCTCGAGGATTAGAGTATTTGCACAAAGGTTGCAATACTAAAATCTTGCATTTTGATATAAAACCTCATAACATATTGCTAGACGATGATTTTTGTCCTAAGGTTTCAGATTTTGGACTCGCAAAAGTATGTCCAAGAAAAGACAGTATCATATCCTTATTAGGTGCTAGAGGCACTGCAGGATACATTGCTCCAGAAGTGTTCTCTAGAAACTTTGGCGGTGTCTCCCACAAGTCCGATGTATATAGCTACGGAATGATGGTTTTAGAAATGGTTGGGGGAAAACAGAATAACAATATCATTGATGTTGAACGGTCGAGTGAAATTTATTTTCCACATTGGGTTTACAAGCGAATTGAACTGAATCAAGAACCTAGATTACGAAGCATTAAAAGTGAATTTGATAAAAAGATTGTACAAAAGATGATTATAGTAAGCTTATGGTGCATCCAAACTGATCCATCACATAGGCCTGCAATGAGTAAAGTGGTAGATATGATGGAAGGTAGCTTGGAATCTCTGCAAATACCACCAAAACCATGTCTCTCTTCACCTCCTAGGTCTCCCTCAAGATCATCAGATTATAACACACACACATCTCAGGATTTATATCATTCAGGAACAGTCCATACCACTGAATGTGAACCTCTAATCATCCTTGGTAGAGCTAGTGGGAGACCCCCATCCCCAGAAAATGGCGAAACAATATTGTTGTCAAATAGTACAAGACTTGAGGATGACTAG 2022 0.3645 MVPQRLFLFSCFVTQLLLASGNCPSSINCGFLGEIEFPFTSTQHPNCGMLVIHGCDDYEPQSKKTIQNNKRWFDVLKIEPFTITIRDDQLHDLLLQRSCNILTYNSMFTVNTPLVSSRLENPVTVFGCNSNNTLDLQKYYSVSNSTSICRNENDTLNGVSDSDIQNNRAIVVIIDTISSNSNHLKGCSNVDLPTSSKVNHLDPDELFNFLSGDIAIKIQVSQNCSTCHDLYGGQCRLDNTGNFYCHQGKSKKTHLTVAAATSSAGVLGVLVFLAWFLRRRFINNKNPPYQIIELFLKNHGHLAAKRFTYAEIKKATNSFKNKLGQGGYGSVYKGTLQDGSLVAVKVLSESNGNGEEFINEVASISVTSHVNIVSLLGFYLEGSKRALIYDYMPNGSLEKFIYEDKDPLNLNLQLSCKTIYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDDDFCPKVSDFGLAKVCPRKDSIISLLGARGTAGYIAPEVFSRNFGGVSHKSDVYSYGMMVLEMVGGKQNNNIIDVERSSEIYFPHWVYKRIELNQEPRLRSIKSEFDKKIVQKMIIVSLWCIQTDPSHRPAMSKVVDMMEGSLESLQIPPKPCLSSPPRSPSRSSDYNTHTSQDLYHSGTVHTTECEPLIILGRASGRPPSPENGETILLSNSTRLEDD 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04865 673 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Tsu01g04865 673 SMART serkin_6 317 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04865 673 PANTHER RUST RESISTANCE KINASE LR10-RELATED 29 632 IPR045874 GO:0004672
Tsu01g04865 673 MobiDBLite consensus disorder prediction 601 628 - -
Tsu01g04865 673 MobiDBLite consensus disorder prediction 646 673 - -
Tsu01g04865 673 MobiDBLite consensus disorder prediction 612 628 - -
Tsu01g04865 673 ProSiteProfiles Protein kinase domain profile. 317 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04865 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Tsu01g04865 673 SUPERFAMILY Protein kinase-like (PK-like) 301 593 IPR011009 -
Tsu01g04865 673 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 29 632 - -
Tsu01g04865 673 Pfam Protein kinase domain 320 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04865 673 Gene3D Transferase(Phosphotransferase) domain 1 392 602 - -
Tsu01g04865 673 Gene3D Phosphorylase Kinase; domain 1 296 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04865 Tsu-Chr1 55670842 55673506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04865 257 608 Receptor kinase-like Gene Family AT4G18250 54.444 1.09e-125 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g04865 Pkinase 8.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04865 - - gmx:100785979 808.52