Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04864 ATGTCTTggcttttcattttcaaatcattACTTTTCTCGCTGATTATGCTTCATGTTTCAGGTCAAGATGGAAGAAGATGTCCACACTCTTTTAGTTGTGGAATTCTTGGCCAAATTACCTTCCCTTTCACAGTCACAGAAAGCCCCCACTGTGGCATATTGGCCATAAGTGGTTGCGATAATAAAAACACCAAAAGCATCCAACTAGGAAAGACGCCATCAAAACAGTTTATTCCTGTTTCATCTGTGGATGGTGATACAATCACGGTCATAGATGAAGCTCAACAAAAGAATTTGTTATCCAAAAAATGCCAAGCCTTTCACAATTATCCTCTTCCTCCCACTTCTCCTTTAGGTTCTTTCTacatcaaatataatataactatGTTCAAATGCAATCACTCCCTTAGTGTCATCCCTCCCAAATCATTTGGTAAATATACAAACTGTTCCGGTTATAATATCTATTATGACCAAAAAACTTTGAAACCTCCTGGTTTCAAAGTACCAAGCTCTTTGGCAAAGTGTACAATGTTTCACGTTGCAATAAGAGACATCCGTACTTCTGaccccttttattttctatctgcTGATACCGCAATTGAAGTACAATTATCTCATGATTGCAATAAATGTATTCGCCATCGAGGAGGCCGATGCCAACTTGACATCCACGGAAAGTTCCATTGTGCGCAAGGGAGTAGAACTAGAAACTGGCATGTGAGAATATTGGTACTAGGAGTTGGAGTAGTTGTTACAGCAGTAGCTCTACTATTACTAGTGGTCAAGATCTACTATACAAGATTGAAGAAGCAAAATCCAACGAATCTAGTCATTGAGATCTTTTTGAAAAAACATGGTTCTCTTCAAACAAAGAGGTTTAGTTACTCTGAGATTAAGAAAGTGACTAACTCCTTCAAAATCAAACTAGGTCAAGGGGGATTCGGCAGTGTATACAAAGGACAGTTAGATGATGGACGTTATGTTGCAGTGAAGATCCTAAATGAATTGAAGGATAGTGGTGAGGAATTCATGAATGAAGTTGCAAGTATCTGTGAAACTTCTCATGTTAACATTGTCAATCTTCTTGGGTTCTGCTTAGAAGGTTCCAATCGAGCTTTAGTTTACGAGTTTATGCATAATGGCTCTCTTGAGAAGTTTATTTTCGAGGAAAATGACCATACTCAAGATCTCCAATTGGATTGCCAAACTTTGTACCACATCGCAATTGGGGTAGCTCGAGGCTTAGAATACTTGCACAAAGGTTGCAATACTAGAATTTTGCATTTTGACATAAAACCTCATAACATTCTTTTGGATGAGAATTTCAACCCCAAAATTTCAGATTTTGGACTTGCTAAAATTTGCACAAGAAAAGAAAGTATGGTATCAATATTTGGTGCTAGAGGAACGGCGGGGTATATTGCTCCAGAGGTATTTTCTAGGAATTTTGGTGCAGTGTCACATAAGTCAGATGTTTACAGTTACGGAATGATGGTCATGGAAATGGTCGGAAGgagaaaaaatatcaacactGAAGTTAACcgattgagtgaaatatattTTCCTCATTGGATTTACAACCGTCTTGATTCTAATCAAGATCTTGGTTTACGTAATATAAGAAATGAAATTGATGACGAAAAGGTGAGAAAGATGACACTAGTAGCTCTATGGTGCATACAAACCAACCCTTCAACTCGACCGGACATAAGTAAAGTGGTGGAGATGCTAGAAGGTAGAGTAGAGTTGTTGCAAATGCCACCTAAACCCTTTTTGTCTTCTCCTTCAAACTCTCCGGTCCATTTCTCAAGTGAGACACAGACTCTAGAGTCCGTGAGAATGCTAGATGCAGAACAATGA 1863 0.3682 MSWLFIFKSLLFSLIMLHVSGQDGRRCPHSFSCGILGQITFPFTVTESPHCGILAISGCDNKNTKSIQLGKTPSKQFIPVSSVDGDTITVIDEAQQKNLLSKKCQAFHNYPLPPTSPLGSFYIKYNITMFKCNHSLSVIPPKSFGKYTNCSGYNIYYDQKTLKPPGFKVPSSLAKCTMFHVAIRDIRTSDPFYFLSADTAIEVQLSHDCNKCIRHRGGRCQLDIHGKFHCAQGSRTRNWHVRILVLGVGVVVTAVALLLLVVKIYYTRLKKQNPTNLVIEIFLKKHGSLQTKRFSYSEIKKVTNSFKIKLGQGGFGSVYKGQLDDGRYVAVKILNELKDSGEEFMNEVASICETSHVNIVNLLGFCLEGSNRALVYEFMHNGSLEKFIFEENDHTQDLQLDCQTLYHIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDENFNPKISDFGLAKICTRKESMVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVMEMVGRRKNINTEVNRLSEIYFPHWIYNRLDSNQDLGLRNIRNEIDDEKVRKMTLVALWCIQTNPSTRPDISKVVEMLEGRVELLQMPPKPFLSSPSNSPVHFSSETQTLESVRMLDAEQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04864 620 Pfam Protein kinase domain 309 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04864 620 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 606 IPR045874 GO:0004672
Tsu01g04864 620 SMART serkin_6 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04864 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Tsu01g04864 620 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Tsu01g04864 620 ProSiteProfiles Protein kinase domain profile. 304 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04864 620 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 6 606 - -
Tsu01g04864 620 Gene3D Phosphorylase Kinase; domain 1 267 378 - -
Tsu01g04864 620 Gene3D Transferase(Phosphotransferase) domain 1 379 586 - -
Tsu01g04864 620 SUPERFAMILY Protein kinase-like (PK-like) 287 579 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04864 Tsu-Chr1 55667920 55670168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04864 198 606 Receptor kinase-like Gene Family AT5G38260 47.711 9.92e-124 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g04864 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04864 - - gmx:100785450 731.48