Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04860 ATGATGTTATTTGTGTTGGTGGGTGGAGATAAGAGTAATTACCAAGGAGAGTGTCCAGATTCATTTGGTTGTGGATATCTTGGAAATATCAGCTTCCCTTTCACTACAACTGAACGCCCGGACTGTGGCTTATTGCCAATACGTAATTGTGGTGATGCTCTACTGAAGACCAAAACGATCCAATTTGAGAATAAAAGTAAACAGTTTGAGTTAGAGGTTCAACTTGTAAGTCCTCTTGAGTATCAGTATCTCGGTGCTAATGCTACTTGTAGTTGTGTTTTTAGAGACAAAAATCTCCACAAACTGCTGCAAAACAAAAGTTGCGAAGCTTTCAGATATAATTATACTCTCCCTCCCACCACTCACTTTGTTTCTTTTCATATGGAAACTCATGCAACCTTGTTCATGTGCAACCGTACCCTCCATGTCAACCCTCCAGCATATATGCATATTTATACAAAGTGTCCTATTTACGATCTCTACTACCAGCCTTATGAATATGCATATAATGCATCTCCGAGTGTTTTTACAGCTTGTACAAATATCCGGCTTCCAATTAAAGACTTTGCTGACAATGACGACCCTTTTAAGTTTGTAACTGCTGATATCCCAATTCAAGTAAGCATAACAAAGGAATGTGCAAATTGTCACTACAACCAAAGTGGACTGTGCAAGCTTGACAGCAACGGGAGGTTTTATTGTGCCAATGTCACAGTTAGCAAGAATAAAGGTCTGAGCCGGAATGTCAAACTGGGTATAGCAGCCATGGTGGCTATTGGAGTTGCAGTGCTGATGTTGTTGGCTTGCTGCATTAGGAAAAATATCTTGCCTCCCACTTTTCTTTTGTTCAGGAAGGAGAATCCAACCCGTCAAATTTTTGAGCAGTATTTGAAAGAACATGGACCTCTTCCTGCTGCTGCTAGGTACAGTTATTCAGATATCAAGAAAATAACAAActctttcaaaaacaaattaggTCAGGGAGGGTATGGAAGTGTGTACAAAGGGAAATTACATGATGAGCGTGTTGTTGCAGTGAAGGTTTTAAGTGAATCAAAAGGTGATGGTGAAGATTTCATTAATGAAGTTGCGAGTATTAGTAGAACTTCGCATGTCAATGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGGCACTAATATATGAATTCATGCCAAATGGATCTCTTGAGAAGTTCATATATGAAGAGAAAAATCCAATAAAAGATGATCCCCAGTTAGATTGCAAAACATTGTATGATATTGCAGTTGGCGTTGCTCGTGGATTAGAGTACTTGCACAGAGGCTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCATAATATATTACTAGATGATGatttttgtcccaaaatttCAGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATATTTGGCGCAAGGGGAACACCAGGATATATTGCTCCAGAGTTGTTCTCTAGAAATTTTGGTGGAGTGTCACATAAATCAGATGTCTATAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCAAAGAAAGAACATTAAGGTTGAAGTTGATTGTTCTAGCGAGATATATTTTCCGCACTGGATTTACAAGCGTCTTGAATTGAATCAGGATTTTGGACTAAGGtgtattaaaaatgaaattgatgaagaaatggtaagaaaaatgacaGTGGTGAGTTTATGGTGCATACAAACCGACCCTTTGCATCGACCAGCTATGCATAAGGTGGTGGAAATGCTGGAAGGAAGTCTTCAAGTGCTGGAAATACCACCCAAACCCTTTTTGTCATCTCCTTCAACATCTTCAATCCATTTATCATCTGAAACATAG 1872 0.3729 MMLFVLVGGDKSNYQGECPDSFGCGYLGNISFPFTTTERPDCGLLPIRNCGDALLKTKTIQFENKSKQFELEVQLVSPLEYQYLGANATCSCVFRDKNLHKLLQNKSCEAFRYNYTLPPTTHFVSFHMETHATLFMCNRTLHVNPPAYMHIYTKCPIYDLYYQPYEYAYNASPSVFTACTNIRLPIKDFADNDDPFKFVTADIPIQVSITKECANCHYNQSGLCKLDSNGRFYCANVTVSKNKGLSRNVKLGIAAMVAIGVAVLMLLACCIRKNILPPTFLLFRKENPTRQIFEQYLKEHGPLPAAARYSYSDIKKITNSFKNKLGQGGYGSVYKGKLHDERVVAVKVLSESKGDGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEEKNPIKDDPQLDCKTLYDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPRKESIVSIFGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGQRKNIKVEVDCSSEIYFPHWIYKRLELNQDFGLRCIKNEIDEEMVRKMTVVSLWCIQTDPLHRPAMHKVVEMLEGSLQVLEIPPKPFLSSPSTSSIHLSSET 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04860 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 621 IPR045874 GO:0004672
Tsu01g04860 623 Gene3D Transferase(Phosphotransferase) domain 1 394 608 - -
Tsu01g04860 623 Gene3D Phosphorylase Kinase; domain 1 294 393 - -
Tsu01g04860 623 SUPERFAMILY Protein kinase-like (PK-like) 304 595 IPR011009 -
Tsu01g04860 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Tsu01g04860 623 ProSiteProfiles Protein kinase domain profile. 319 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04860 623 Pfam Protein kinase domain 322 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04860 623 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Tsu01g04860 623 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 12 621 - -
Tsu01g04860 623 SMART serkin_6 319 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04860 Tsu-Chr1 55614105 55616239 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04860 207 621 Receptor kinase-like Gene Family AT1G66910 49.769 1.60e-129 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g04860 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04860 - - cam:101490487 947.962