Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04856 ATGGTCGCTGTTGGAGTTGCATTGTTGATGTTGCTGGCATACTGCAATAGGAAAAAACTCGTCCCTCAatcatttattttgttcaaCAAGGAGAGTTCAACCCATCAAATTATTGAGGAGTTTCTGAAAAAACATGGACCTCTCCAGCTGTTAGTGAAGGTTTTAAGTGAATCAAAAGGTGACGGTGAAGATTTCATCAATGAAGTTGCGAGTATTAGTAGAACTTCGCATGTCAATGTTGTAAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGGCGCTACTATATGAGTTCATGCCTAACGGATCGCTTGAAAAGTTCATATACGAAGAGAAAAATCCATTGAAGGATGATCGCCAATTGGATGGCAAAACTTTGTATGATATTGCAGTTGGTGTTGCTCGTGGATTAGAGTACTTGCACAGAGGCTGCAACACTAGAATCTTACATTTTGACATCAAACCTCATAATATATTACTTGATGAGGATTTCTGCCCAAAAATTTCAGATTTTGGACTTGCTAAAATATGTCTAAGAAAAGACAGCATTGTATCCATAGTTGGTGCAAGGGGAACACCAGGATATATTGCACCAGAGTTGTTCTCCAGAAGTTTTGGCGGGGTGTCGCATAAATCAGATGTCTACAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCGAAGAAACAACATCAAAGTTGAAGTGGATTGTTCTAGCGACTTATATTTTCCACACTGGATTTACAAGCGTCTTGAATTGAATCAAGATATGGGGCTCAAGtgtattaaaaatgaaattgatgaagaaatggtaagaaaaatgacCGTGGTGAGTTTATGGTGCATTCAAACCGACCCTAAGAATCGACCAGCAATGCGTAAAGTGGTGGAAATGTTGGAAGGGAGCCTTCAAATGCTGGAAATACCACTGAAACCCTATTTGTATTCTCCTTCAGCATCTTCAATCCATTTATCTTCTGGAATATTGTAA 993 0.3726 MVAVGVALLMLLAYCNRKKLVPQSFILFNKESSTHQIIEEFLKKHGPLQLLVKVLSESKGDGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALLYEFMPNGSLEKFIYEEKNPLKDDRQLDGKTLYDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKICLRKDSIVSIVGARGTPGYIAPELFSRSFGGVSHKSDVYSYGMMVLEMVGRRNNIKVEVDCSSDLYFPHWIYKRLELNQDMGLKCIKNEIDEEMVRKMTVVSLWCIQTDPKNRPAMRKVVEMLEGSLQMLEIPLKPYLYSPSASSIHLSSGIL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04856 330 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 50 326 - -
Tsu01g04856 330 ProSiteProfiles Protein kinase domain profile. 1 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04856 330 SMART serkin_6 35 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04856 330 Gene3D Transferase(Phosphotransferase) domain 1 104 314 - -
Tsu01g04856 330 Gene3D Phosphorylase Kinase; domain 1 32 103 - -
Tsu01g04856 330 Pfam Protein tyrosine and serine/threonine kinase 44 300 IPR001245 GO:0004672|GO:0006468
Tsu01g04856 330 PANTHER RUST RESISTANCE KINASE LR10-RELATED 50 326 IPR045874 GO:0004672
Tsu01g04856 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Tsu01g04856 330 SUPERFAMILY Protein kinase-like (PK-like) 50 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04856 Tsu-Chr1 55594929 55596034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04856 50 315 Receptor kinase-like Gene Family AT4G18250 59.559 2.49e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g04856 PK_Tyr_Ser-Thr 1.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04856 - - cam:101490487 543.888