Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04842 ATGGCATCAACACACATCAGAGACATTCTAACCGCTTTCAATCCTTCTCTTGACTTCTTTGCCATAACCACCGGTGACGGTCGCATTAAGATATGGGATACACTCAAGGGACAGATCCAAACCGAGTTTGCAGACATTACTTCAACTCATCAAACTAATATTTTTGACAAACAAGGTCATCTTTCTGTTGATTATACTTGTATCAAGTGGTTATCTTTTCAAACTAAGAGGAAAAGGAAACACTCATCCTCTTTGTTGGTGCTTGGAACTGGTAGTGGTGATGTTTTAGCACTTGATGTTTCTGCTGGTCAATTGTCTTGGAAAATTAATGATTGTCATCCCGGAGGTGTTAGAGCCATTTCGTCTTTGGCAAATGGATCAAGCTTTTACACCGCGGGTGCAGATGGAACGATATGCATGATAGATTTCACGACAGGAAATTTGCTGAAGAAATTTAAAGCCTCTTCGAAGGCAGTATCTTGCATATCAGTTTCTCCGGATGGGAAGAAGGTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTGATGAAAAAAAGATTCAAAAATTCTCTGGTCATCCTGGATCTGTCCGGTGTATGGTCTTCACTGAAGATGGCAAGTATATCCTCTCGTCTGCCGTTGGGGAAAGAAATGTTGCTGTTTGGAGATTAGACGGTCCTAAAAAGCAGTCAGCTAGTTGTATTCTTGCAACGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAATGGAGAACATGATGAGGCTGGCATATGCGTTTTGGCCATATCAGAAATTGGCCTTTGTTACATTTGGTTTGGAAATAGTATTGATGAACTACGAACTGCAAAACCCACGAAAATATCATTATCTTTGGATGCCATTTCCACCAAAAATTACAAGGGTGCACTTCCTGCAATATATGCTGCAAAATTACAGAGCACCCAGAAGCCATCCTCTGGGCAGGTTTTTCTTGTTTATGGGATGCTTGTAAAACCATCGTTTCAAAATATTCTAGTTCATTCCGGTACAGATGTAAAGTTGAGTGTCTCCCGTGATGGTGTTCTTCTTCCAATGAGTCAATCTCTTGTCAAATCTAAGAAGAGGACTGATGTTCATAGAGTAACTGCACTAGACCGTGCTAATGCCGAGGATGCCTTGCTTCCTGTTCCTAAAGTTTTTGATTCTCATGAGAAAGAGGAAGCATTTCAAAACTCTTTGGGCAAGGATGTAATGGATGATTTGCTTACAAGTGGTACAGCTGATTCTATGGAGATAGATGATGGGATTGTCCAAAGGGAGACTGATGTTATTAGCATGGAGGACCGGATGAGATCACGAGGATTGCTTTACAGTGAAAGTGATTGTGCATCAAACTTTGAACTTTGTTCTAAATTGTTGAAGGGTATTGATCTGGAATTTACTCTTCCAAAGAAAAAGGTAAGAGCAGCCGTTTTGTCTATGGAACCAAGTGAAGCATTCAAGCTACTGGAAGTGTTACTGGCTATATGGCAATCAAGGTCGTCTAGTAGAGAGTGTGTGCTTCCATGGATGTATAGTATATTAGTTATTCATGGTCATGATGCTGCTGAAGAATCCGTAACACGTATGCTTGATACAGTGTACAAGATTACAAATTCTAGAGGGGCAGCTCTTCAGTCTTTGTTGCAATTATCAGGTCGTCTACAACTGGTGACATCACAGATTTATAAGGCTTCTCAGAGAATAAGCCATTCAGTGGATGATCTTCAAtcagaagaaagtgaagatgaggATGAATTTTATCACGAGGataaagatgatgaagaagatgatgcaTCTGAAATAAGTACCGACAATGAAAACTAG 1860 0.3952 MASTHIRDILTAFNPSLDFFAITTGDGRIKIWDTLKGQIQTEFADITSTHQTNIFDKQGHLSVDYTCIKWLSFQTKRKRKHSSSLLVLGTGSGDVLALDVSAGQLSWKINDCHPGGVRAISSLANGSSFYTAGADGTICMIDFTTGNLLKKFKASSKAVSCISVSPDGKKVATAAAQLKIFNCSDEKKIQKFSGHPGSVRCMVFTEDGKYILSSAVGERNVAVWRLDGPKKQSASCILATEHPAVFLDSRCIDNGEHDEAGICVLAISEIGLCYIWFGNSIDELRTAKPTKISLSLDAISTKNYKGALPAIYAAKLQSTQKPSSGQVFLVYGMLVKPSFQNILVHSGTDVKLSVSRDGVLLPMSQSLVKSKKRTDVHRVTALDRANAEDALLPVPKVFDSHEKEEAFQNSLGKDVMDDLLTSGTADSMEIDDGIVQRETDVISMEDRMRSRGLLYSESDCASNFELCSKLLKGIDLEFTLPKKKVRAAVLSMEPSEAFKLLEVLLAIWQSRSSSRECVLPWMYSILVIHGHDAAEESVTRMLDTVYKITNSRGAALQSLLQLSGRLQLVTSQIYKASQRISHSVDDLQSEESEDEDEFYHEDKDDEEDDASEISTDNEN 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04842 619 Pfam Dip2/Utp12 Family 481 570 IPR007148 -
Tsu01g04842 619 PANTHER OS03G0300300 PROTEIN 1 618 - -
Tsu01g04842 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 234 IPR001680 GO:0005515
Tsu01g04842 619 MobiDBLite consensus disorder prediction 581 619 - -
Tsu01g04842 619 MobiDBLite consensus disorder prediction 588 619 - -
Tsu01g04842 619 PANTHER OS03G0300300 PROTEIN 1 618 - -
Tsu01g04842 619 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 270 IPR011047 -
Tsu01g04842 619 Pfam WD domain, G-beta repeat 187 224 IPR001680 GO:0005515
Tsu01g04842 619 Pfam WD domain, G-beta repeat 5 33 IPR001680 GO:0005515
Tsu01g04842 619 Gene3D - 4 139 IPR015943 GO:0005515
Tsu01g04842 619 Gene3D - 140 276 IPR015943 GO:0005515
Tsu01g04842 619 SMART WD40_4 2 33 IPR001680 GO:0005515
Tsu01g04842 619 SMART WD40_4 145 182 IPR001680 GO:0005515
Tsu01g04842 619 SMART WD40_4 185 225 IPR001680 GO:0005515
Tsu01g04842 619 SMART WD40_4 102 142 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04842 107 226 U-box Gene Family AT2G33340 31.452 1.49e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04842 K14546 - gmx:100784148 874.389