LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g04822	ATGCAGATGATCCAAAACGACGAGTCTTTTGGAGTTCCTCGCAGTGATGTACATGCGTTTGCGTATCTTAAGGCAGTAAAAGTTGCACTTCAACATGACGGAAATAAGTATGATGAGTTTTCAAAACTCCTAAAAGCTGTACGGGCTAAAAGGTATGCTGATGAGTTTTTAAACATTGTCAAAGGAAGAGTGAAGAATCTGTTTAAAGGGGatacaaatttaattattgGATTCAACATCTTCCTGCCAATAACACATCGATTCAACATCTTCCAGCTAAAGAGAAATCAACTTGAGACCATTGGGAAAAAGGTGAAGCAGGTAGAAGAGAATTGTGAACTTCCTTGGGATGTGCTTCGTATCATTTCCAAAACACTAGATTTTGACGACCTCTTTCACTTTGCTGGTGTGTGCAAGAATTGGAGGacttttcataaaatttattggCGAAATTTCTTGACATCTAAAGAACCATTACTTCTTAAAATTTCATGTCATTTGAAGGAATCATATTGCTTTATTAGAATACCCGACCAAAAAGTTTATTGCTTGAAGATGTTGAAGTACTTCTTCAGCTTCAACTATATTATGTTTTCCAGTGGTTATTTTATTGTGACGAAGTCCAATAATTCATTTCTGCTAATCAATCCATTTACAAGAATAAAGAAGGTAATCAATACTCCTCCCTCTGCTGTTAACTCTTATAGTTCAATTAAGTGTGCCTTGCTTGCTTTTGGAAAACGCTCTGAGGAATTTGTGTTGGTGGTTTTATGCAAACTTCGTTTGAATGTCTACCAATCTCGAAATTGTGGATGGGTTACCTATTCATCGATGGAAAACTCGGGGAGGTTTGTTGACGCTGTTGTTTtgcataatataatatatgttgTCACTGATAAGGCCAACATAGGGGTACTCAGCTTGAattctacaaatattaaatttttaaaccTGGAGAGTACTCCTAATGTAACATTTCCCTCAAACCTTAACTTAGTTAATTGGGATGAGCAACTTTTAGTCATTCATTTCATGTCCAATGGAATAAAGAATGTGTACAAGATAGACTTCTCAACCATGAATTACGTCAAAATGGAAACTTTGGGCGACATTGCATTATTTTGTGCTTTGAATGGTTTTGGTTTTAAGAGTAAATCTTATGCGTTGAGCAACCCAAACAAGTGGGGATATGAGAGCAATTCTGTGTATATCATGGATTCTTTATCTACAAAATGTAGTGTGTATTCAGGGGatgataaaaaattgcaaaaacatATTGCGCTTCCAAGTCGTCATGGAAGAGTGTCCTTCATGACTGAGTGGTGTTTTAGACATCTACGGTATGAGGTAGATTATTCTCTAGTTGAGTAA	1371	0.3465	MQMIQNDESFGVPRSDVHAFAYLKAVKVALQHDGNKYDEFSKLLKAVRAKRYADEFLNIVKGRVKNLFKGDTNLIIGFNIFLPITHRFNIFQLKRNQLETIGKKVKQVEENCELPWDVLRIISKTLDFDDLFHFAGVCKNWRTFHKIYWRNFLTSKEPLLLKISCHLKESYCFIRIPDQKVYCLKMLKYFFSFNYIMFSSGYFIVTKSNNSFLLINPFTRIKKVINTPPSAVNSYSSIKCALLAFGKRSEEFVLVVLCKLRLNVYQSRNCGWVTYSSMENSGRFVDAVVLHNIIYVVTDKANIGVLSLNSTNIKFLNLESTPNVTFPSNLNLVNWDEQLLVIHFMSNGIKNVYKIDFSTMNYVKMETLGDIALFCALNGFGFKSKSYALSNPNKWGYESNSVYIMDSLSTKCSVYSGDDKKLQKHIALPSRHGRVSFMTEWCFRHLRYEVDYSLVE	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g04822	456	SUPERFAMILY	F-box domain	113	159	IPR036047	GO:0005515
	Tsu01g04822	456	ProSiteProfiles	F-box domain profile.	108	152	IPR001810	GO:0005515
	Tsu01g04822	456	SUPERFAMILY	PAH2 domain	17	83	IPR036600	GO:0006355
	Tsu01g04822	456	Pfam	F-box domain	113	143	IPR001810	GO:0005515
	Tsu01g04822	456	ProSiteProfiles	PAH domain profile.	12	85	IPR003822	GO:0006355
	Tsu01g04822	456	Gene3D	Paired amphipathic helix	13	86	IPR036600	GO:0006355
	Tsu01g04822	456	PANTHER	OS06G0113600 PROTEIN	108	451	-	-
	Tsu01g04822	456	PANTHER	OS06G0113600 PROTEIN	108	451	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g04822	Tsu-Chr1	55195787	55198537	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Tsu01g04822		F-box	2.5e-06	CL0271

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g04822	-		-	cam:101488742	481.87