Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04812 aTGGCTTCACGGAGAATCGTCTCGTCTTTGATTCGATCATCCCTCCGTCCATCTCATTCCAAATCATCAATCACCTCTTCAACATCGCGTCTCTCTTCTCAATCACGTCCATCTCCAAATCCATACCTTCTCAACCGTCTAACTGAATATGCTACAGCCGCGGCGGCTAAAACACCCGGAGCTCCcgctcctcctcctcctccgtCTAACAAACTTAACGTTTCCGGAAAGATCACCGATGAATATACCGGTAAAGGCGCCATCGGGAATATTTGTCAGGTCATTGGTGCTGTCGTTGATGTCAGATTTGATGAAGGGGTGCCTCCAATTTTGACTGCTCTTGAGGTTCTAGATCATTCTTCACGTATGATTTTGGAGGTTGCACAACATTTGGGTGAAGGTGTTGTGAGAACTATTGCTATGGAAGCTACTGAAGGTGTTGTTCGAGGGTGGCGTGTTCTCAATACCGGATCTCCCATCAGTATTCCCGTTGGAAGGGCCACCCTTGGACGTATCATGAATGTTATTGGAGAACCTATCGACCAGAAAGGCGAATTCAAAACGGAGCATTATTTGCCTATTCACAGAGAAGCTCCACCTTTCGTTGAGCAAGCAACTGAACAACAAATCCTTGTTACTGGTATCAAGGTTGTTGACCTACTTGCACCATACCAAAAAGGAGGGAAAATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACCGTGCTTATTATGGAACTTATCAATAATGTTGCAAAGGCTCATGGTGGTTTCTCTGTTTTTGCTGGTGTTGGTGAACGAACCCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGTTGGGTGATCAACAGGCTGAAAGTAAATGTGCTCTTGTATATGGTCAAATGAACGAACCCCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGTCTTACCGTTGCTGAACACTTCCGCGATGCTGAAGGACAAGATGtgcttctttttgttgacaacaTTTTCCGCTTCACTCAAGCAAATTCAGAGGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTATCTACTGATCTTGGAGGTCTTCAAGAACGTATTACAACGACCAAGAAGGGTTCAATTACATCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACTGTGCTATCAAGACAGATTTCTGAGCTCGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCTCCACTTATTTTGGGTGATGAGCACTACAAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTCTGGGAATGGATGAGCTAAGTGAAGATGATAAATTAACTGTTGCTCGTGCCCGTAAAATTCAACGTTTCTTAAGCCAACCTTTTCATGTTGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGAATTGAAGGAGAACACTAAAAGTTTCCAGGGTGTGTTGGATGGCAAATATGATGATCTGTCTGAGCAGGCATTTTACATGGTTGGTGGTATTGATGAAGTCGTTGCAAAGGCAGAGAAGATTGCTAAGGAAAATGTCGCGTCTTAA 1683 0.4314 MASRRIVSSLIRSSLRPSHSKSSITSSTSRLSSQSRPSPNPYLLNRLTEYATAAAAKTPGAPAPPPPPSNKLNVSGKITDEYTGKGAIGNICQVIGAVVDVRFDEGVPPILTALEVLDHSSRMILEVAQHLGEGVVRTIAMEATEGVVRGWRVLNTGSPISIPVGRATLGRIMNVIGEPIDQKGEFKTEHYLPIHREAPPFVEQATEQQILVTGIKVVDLLAPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDQQAESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYKTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTKSFQGVLDGKYDDLSEQAFYMVGGIDEVVAKAEKIAKENVAS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04812 560 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 557 - -
Tsu01g04812 560 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
Tsu01g04812 560 Gene3D - 160 437 IPR027417 -
Tsu01g04812 560 CDD F1-ATPase_beta 159 440 - -
Tsu01g04812 560 CDD ATP-synt_F1_beta_C 442 549 - -
Tsu01g04812 560 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
Tsu01g04812 560 MobiDBLite consensus disorder prediction 1 42 - -
Tsu01g04812 560 Gene3D - 76 159 - -
Tsu01g04812 560 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
Tsu01g04812 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Tsu01g04812 560 SMART AAA_5 226 498 IPR003593 -
Tsu01g04812 560 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Tsu01g04812 560 MobiDBLite consensus disorder prediction 56 75 - -
Tsu01g04812 560 CDD ATP-synt_F1_beta_N 87 160 - -
Tsu01g04812 560 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Tsu01g04812 560 Gene3D - 438 559 IPR024034 -
Tsu01g04812 560 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Tsu01g04812 560 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
Tsu01g04812 560 PIRSF ATPase_subunit_beta 3 559 - -
Tsu01g04812 560 TIGRFAM atpD: ATP synthase F1, beta subunit 88 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Tsu01g04812 560 PANTHER ATP SYNTHASE 3 557 - -
Tsu01g04812 560 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 85 159 IPR036121 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04812 Tsu-Chr1 55094933 55098738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04812 118 496 Primary Pumps ATPases(2) AT1G20260 28.395 1.57e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04812 K02133 - gmx:100789705 919.842