Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04796 ATGAGCAATGAGAGCAACATGTTGGTGAGTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGTACTTTGCACTCTTTGTGGTGTAGATGTTGCGCTCGTTGTATTCTCACCTAGTGGGAAGACATTTTCTTTTGGTCATCCTAATGTTGATACGGTGATAGATCGCTTTCTCTCTCAGGTCCCACCCCAAAACAACGACACCATGCAATTCATTGAGGCACGCCGCAATGCTAACATGAGTGAGTTCAATGCTCAACTGACTCAAATCAACAAGATGTTGGACGACATGAAGAAACATGGTGATGAGCTGAGCCAATTGCACAAGGAGACGAAGGCTTTATTTTGGTGGGCTTGTCCAATTGGTGGGATGAATAGAGTTGAACTTGAATTCCTGATGAATGCTTTGAAGGAGCTTAAGAATCTTGTTGCACAACATGTTATTGGGATTGCAATTCAGGACGCACCTACTcaaattctttcattttttgttgGCAATGTTTCATCCTCTAGCATCCATCTCTATATGTCAAATCCTCAACATGCTCAAATGTTTCCACTGCAACTTCCTCAAAATCCTATGTTGCAATCTAATTTGTTTGGCTACAACAATATAGGAGGAGGAGGATATGGAACCCCCtga 648 0.4136 MSNESNMLVSFSKRRSGLFKKASVLCTLCGVDVALVVFSPSGKTFSFGHPNVDTVIDRFLSQVPPQNNDTMQFIEARRNANMSEFNAQLTQINKMLDDMKKHGDELSQLHKETKALFWWACPIGGMNRVELEFLMNALKELKNLVAQHVIGIAIQDAPTQILSFFVGNVSSSSIHLYMSNPQHAQMFPLQLPQNPMLQSNLFGYNNIGGGGYGTP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04796 215 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 1 148 - -
Tsu01g04796 215 PRINTS MADS domain signature 13 28 IPR002100 GO:0003677|GO:0046983
Tsu01g04796 215 PRINTS MADS domain signature 28 49 IPR002100 GO:0003677|GO:0046983
Tsu01g04796 215 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
Tsu01g04796 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 47 IPR002100 GO:0003677|GO:0046983
Tsu01g04796 215 Gene3D - 3 70 IPR036879 GO:0003677|GO:0046983
Tsu01g04796 215 PANTHER MADS BOX PROTEIN 1 148 - -
Tsu01g04796 215 Coils Coil 92 112 - -
Tsu01g04796 215 Gene3D - 71 159 - -
Tsu01g04796 215 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Tsu01g04796 215 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04796 Tsu-Chr1 54992409 54993056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04796 1 205 Type I MADS-box Gene Family AT5G60440 43.750 8.27e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g04796 SRF-TF 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04796 - - mtr:MTR_1g105905 250.366