Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04792 ATGTCGAGTGGAAGGAAAGACAAAGGTCGCAAAAAAATCGAGATGAAAAAGATGAGCAACGAAAGCAACCTGCAAGTTACTTTTTCGAAACGTCGTGACGGACTTTTCAAGAAAGTCAATGAATTTTGCACACTTTGTGGTGCAGTTGTTGCTCTCATTGTATTTTCACCTAGTGGGAagacttttttttgtcatccCAATGTTGATACAGTCATAGATCGCTATCTCTCTCAGGTCCCACCTCAAAACAACGACATCGTGCAATTCATTGAAGTTCGCCGACGCGCTAACGAGAGTTAG 300 0.4 MSSGRKDKGRKKIEMKKMSNESNLQVTFSKRRDGLFKKVNEFCTLCGAVVALIVFSPSGKTFFCHPNVDTVIDRYLSQVPPQNNDIVQFIEVRRRANES 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04792 99 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 90 - -
Tsu01g04792 99 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Tsu01g04792 99 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu01g04792 99 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu01g04792 99 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu01g04792 99 PANTHER MADS BOX PROTEIN 8 90 - -
Tsu01g04792 99 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 62 IPR002100 GO:0003677|GO:0046983
Tsu01g04792 99 SMART madsneu2 8 66 IPR002100 GO:0003677|GO:0046983
Tsu01g04792 99 ProSiteProfiles MADS-box domain profile. 8 62 IPR002100 GO:0003677|GO:0046983
Tsu01g04792 99 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04792 Tsu-Chr1 54980517 54980816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04792 5 96 Type I MADS-box Gene Family AT5G60440 62.105 3.17e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g04792 SRF-TF 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04792 - - mtr:MTR_1g106070 142.51