Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04788 ATGGGGGATCACTTTGATTTACTGGTCGATCGGTTGCTTACTGAATCGACATTAGAAGCTGCGCTTGAAAGCAGAATGCGGGCGTTGCAAGCTGCATCTTCGGCTGTGGATAACACGGAAGTTGATGTATCTTTGTTGAAGATAGGTCTGGATGATGTCAAATGTTCAGGGAAGATGGTTGAATGCAGGATAtgtcatgatgatgatgatgattctaaTATGGAGACACCTTGCTCCTGTTGTGGTAGTTTGAAGTACGCCCACCGTAGATGTATACAAAGGTGGTGTAATGAGAAGGGCGACACCACCTGTGAGATATGCCACCAGCCGTTCAAGCCTGGTTATACAGCTCCTCCTCCGCTATTTCAGTTTGGACGTATTCCAATGAGTTTTAGGGGAAATTGGGAAATTTCACGAAGAGACTTAAATAGTGCTCATTTGGTTAGCATGGTTCCCACTGACCAGAACCTTATCAATACTAACTATGATCAATATTCAGCCTCTTCTTCGGAGAGTTTGATATGGTGTCGTTCAGTCGCTGTCATTTTCATGGTTCTTCTGGTTTTAAGACATACACTTCCCCTCGTAATTAGTGGAAGTAAAGACTATTATTTCCCACTTTTCATGGTGTTATTATTTCGGAGTGCTGGAATCGTTGTACCTGTATACTTCATGGCTCGAGCAGTGGCACTAATCCAACGACATCGGAGACAACATCGAGAGCATCCTAGTGTCTTGGTCAGTTCATCTGATGACGAAATCGAGCAAGAAGATTTGCAGCCTCAGCCACATATCATACATTTAGTCTAA 810 0.4235 MGDHFDLLVDRLLTESTLEAALESRMRALQAASSAVDNTEVDVSLLKIGLDDVKCSGKMVECRICHDDDDDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSAHLVSMVPTDQNLINTNYDQYSASSSESLIWCRSVAVIFMVLLVLRHTLPLVISGSKDYYFPLFMVLLFRSAGIVVPVYFMARAVALIQRHRRQHREHPSVLVSSSDDEIEQEDLQPQPHIIHLV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04788 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Tsu01g04788 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 113 IPR013083 -
Tsu01g04788 269 PANTHER OS01G0121200 PROTEIN 1 266 - -
Tsu01g04788 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 266 IPR033275 -
Tsu01g04788 269 MobiDBLite consensus disorder prediction 242 262 - -
Tsu01g04788 269 SUPERFAMILY RING/U-box 60 112 - -
Tsu01g04788 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Tsu01g04788 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Tsu01g04788 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Tsu01g04788 269 SMART ringv_2 61 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04788 Tsu-Chr1 54967517 54970409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04788 61 108 C3H Transcription Factor Family AT2G37950 45.098 1.57e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04788 - - vun:114190540 455.677