Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04780 ATGTCAAGCGGAAGGAAAGGCAAAGGTCGCCGAAAGATTGAAATGAAAAAGATGAGCAACGAGAGCAACCTCCAGGTGACTTTCTCAAAGCGCCGTAGCGGACTTTTCAAGAAAGCTAGCGAACTTTGCACTCTTTGTGGTGTAGATGTTTCTCTCGTTGTATTCTCACCAAGTGGAAAGACATTTTCCTTTGGCCATCCCAATACTGATATGATCATAGATTGCTATCTCTCTCAGGTCCCACCGCAAAATAACGGCACCTTGCAATTCATTGAGGCTCGTCGTAGCGCCACCCTGTGCGAGCTCAATGCTCAACTGATTCAACTCAACAACATTTTGGACGACCAGAAGAAGCATGAAGATAAGTTAAGCCATTTGCGCAAGGCGGCTGAGGATCAACTTTGGTGGGCATGTCCAATTGATGGGATGGATAAGGCTCGACTTGAATTGTTAAAACAAGCTTTGGAGGACCTTAAGAAACTCATTGCACAACATAATGATAGGATTGCAATTCAGGGTGCTCCTACTCAAACTCTTCCATTTTCTGTTGGCAACGCTTCATCCTTTAATATCTCTCACCATCATCAGTCAAATTCTCAACAATCTCAAATGCTTGCACCACAATATTTTCAGAATCCTATGTTGGAACCTCATTTGTTTGGCTTGAATAATATGGGCAGAGGAGGATATGGACACCCTGGATTCTTTTGA 711 0.4346 MSSGRKGKGRRKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGVDVSLVVFSPSGKTFSFGHPNTDMIIDCYLSQVPPQNNGTLQFIEARRSATLCELNAQLIQLNNILDDQKKHEDKLSHLRKAAEDQLWWACPIDGMDKARLELLKQALEDLKKLIAQHNDRIAIQGAPTQTLPFSVGNASSFNISHHHQSNSQQSQMLAPQYFQNPMLEPHLFGLNNMGRGGYGHPGFF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04780 236 Gene3D - 87 178 - -
Tsu01g04780 236 PANTHER MADS BOX PROTEIN 7 186 - -
Tsu01g04780 236 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu01g04780 236 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Tsu01g04780 236 Coils Coil 148 168 - -
Tsu01g04780 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 186 - -
Tsu01g04780 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu01g04780 236 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu01g04780 236 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu01g04780 236 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu01g04780 236 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu01g04780 236 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu01g04780 236 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04780 Tsu-Chr1 54918984 54919694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04780 5 188 Type I MADS-box Gene Family AT5G60440 47.059 4.52e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g04780 SRF-TF 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04780 - - mtr:MTR_1g105905 277.715